View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10521_low_28 (Length: 270)
Name: NF10521_low_28
Description: NF10521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10521_low_28 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 38222317 - 38222101
Alignment:
| Q |
19 |
gttgtagctgcttgtctcctgtgattcaagtgtcgtcacaacatccattccatctatgacatgtccaaatacaacatggcgattgtccaaccatgaagtc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38222317 |
gttgtagctgcttgtctcctgtgattcaagtgtcgtcacaacatccattccatcaatgacatgtccaaatacaacatggcgattgtccaaccatgaagtc |
38222218 |
T |
|
| Q |
119 |
tacaacatgaaaatcacagcatatactttagtatcaaagcctaaatctaaacaaatttaaacaatcttcaaacaatgtgtatttgtgcaatctaacaact |
218 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38222217 |
tacaa---gaaaatcacagcatatactttagtatcaaagcctaaatctaaacaaatttaaacaatcttc-aacaatgtgtatttgtgcaatctaacaact |
38222122 |
T |
|
| Q |
219 |
aactactaacatttgtcattt |
239 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
38222121 |
aactactagcatttgtcattt |
38222101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 6871277 - 6871309
Alignment:
| Q |
207 |
aatctaacaactaactactaacatttgtcattt |
239 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
|
|
| T |
6871277 |
aatctaataactaactactaacatttgtcattt |
6871309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 45505394 - 45505285
Alignment:
| Q |
26 |
ctgcttgtctcctgtgattcaagtgtcgtcacaacatccattccatctatgacatgtccaaatacaacatggcgattgtccaaccatgaagtctacaaca |
125 |
Q |
| |
|
|||||||| ||||| || ||||||||| ||||||||||||||||||| || ||||||||||| || ||||| |||||||| ||||| | |||||||| || |
|
|
| T |
45505394 |
ctgcttgtttcctgagactcaagtgtcctcacaacatccattccatcaataacatgtccaaacacgacatgtcgattgtctaaccacggagtctacatca |
45505295 |
T |
|
| Q |
126 |
tgaaaatcaca |
136 |
Q |
| |
|
| ||||||||| |
|
|
| T |
45505294 |
t-aaaatcaca |
45505285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 238
Target Start/End: Complemental strand, 48308121 - 48308090
Alignment:
| Q |
207 |
aatctaacaactaactactaacatttgtcatt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
48308121 |
aatctaacaactaactactaacatttgtcatt |
48308090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 239
Target Start/End: Complemental strand, 16622624 - 16622592
Alignment:
| Q |
207 |
aatctaacaactaactactaacatttgtcattt |
239 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
16622624 |
aatctaacaactaattactaacatttgtcattt |
16622592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University