View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10521_low_3 (Length: 432)
Name: NF10521_low_3
Description: NF10521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10521_low_3 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 19 - 427
Target Start/End: Complemental strand, 7739705 - 7739297
Alignment:
| Q |
19 |
ctacctggccgaatcaccgttgtcacaatcagccgtggctggggtctttccggtatgctaccagcggactttggcgaccttccatatcttaacttcctct |
118 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
7739705 |
ctacctggccgaatcaccgtcgtcaccatcagccgtggctggggtctttccggtacgctaccagcggagtttggcgaccttccatatcttaacttcctct |
7739606 |
T |
|
| Q |
119 |
cattggccgaaatgcccaaagtaactgggcctattcctaactctttcaacaaactccaaagactacaaaaactcgaccttggttccaacagtcttagtgg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7739605 |
cattggccgaaatgcccaaagtaactgggccaattcctaactctttcagcaaactccaaagactacaaaaactcgaccttggttccaacagtcttagtgg |
7739506 |
T |
|
| Q |
219 |
gtcgatccccactttcctaggccaattgaagggcttacaggagtttgatttgtctaacaataagttaaccggtgttattccggcgtcattcggctcccta |
318 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
7739505 |
gtcgatccccactttcctaggccagttgaagggcttacaggagtttgatttgtctaacaataagttaaccggtgttattccggcgtcgttcggctcccta |
7739406 |
T |
|
| Q |
319 |
ccgtctctttcccagtttaacgtcagctttaaccaactgtgtggtgcgatacctactgggttgaacaagtttgcaaagagttcgtttgatcataataaat |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||| ||| ||||||||||||||||||||||||||||||| |
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|
| T |
7739405 |
ccgtctctttcccagtttaacgtcagctttaaccaactgtgtggtgctatccctactggattgagcaaatttgcaaagagttcgtttgatcataataaat |
7739306 |
T |
|
| Q |
419 |
gcctctgtg |
427 |
Q |
| |
|
|||| |||| |
|
|
| T |
7739305 |
gcctttgtg |
7739297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 427
Target Start/End: Complemental strand, 7727387 - 7726979
Alignment:
| Q |
19 |
ctacctggccgaatcaccgttgtcacaatcagccgtggctggggtctttccggtatgctaccagcggactttggcgaccttccatatcttaacttcctct |
118 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||| |||| ||| ||||| || ||||||||||| ||||||||||||||||||| |
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|
| T |
7727387 |
ctacctggccgaatcaccgtcgtcaccatcagccgtggctggggtctttctggtacgcttccagcagagtttggcgacctcccatatcttaacttcctct |
7727288 |
T |
|
| Q |
119 |
cattggccgaaatgcccaaagtaactgggcctattcctaactctttcaacaaactccaaagactacaaaaactcgaccttggttccaacagtcttagtgg |
218 |
Q |
| |
|
||||||| ||||||||||||||||| || || || ||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
7727287 |
cattggctgaaatgcccaaagtaaccggaccaatccctaactctttcagcaaactcaaaagactacaaaaacttgaccttggttccaacagtcttagtgg |
7727188 |
T |
|
| Q |
219 |
gtcgatccccactttcctaggccaattgaagggcttacaggagtttgatttgtctaacaataagttaaccggtgttattccggcgtcattcggctcccta |
318 |
Q |
| |
|
| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||| ||||||||| || |
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|
| T |
7727187 |
gccgatccccacttttctaggccagttgaagggcttacaggagtttgatttgtctaacaaccagttatccggtgttattcccgcgtcgttcggctccata |
7727088 |
T |
|
| Q |
319 |
ccgtctctttcccagtttaacgtcagctttaaccaactgtgtggtgcgatacctactgggttgaacaagtttgcaaagagttcgtttgatcataataaat |
418 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7727087 |
ccgtctctttcgcagtttaatgtcagctttaaccaactgtgtggtgcgatacctactgggttgaacaagtttgcaaagagttcgtttgatcataataaat |
7726988 |
T |
|
| Q |
419 |
gcctctgtg |
427 |
Q |
| |
|
|||| |||| |
|
|
| T |
7726987 |
gcctttgtg |
7726979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 427
Target Start/End: Complemental strand, 7731547 - 7731139
Alignment:
| Q |
19 |
ctacctggccgaatcaccgttgtcacaatcagccgtggctggggtctttccggtatgctaccagcggactttggcgaccttccatatcttaacttcctct |
118 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||| |||| || ||||||||||| || |||||||||||||||| |
|
|
| T |
7731547 |
ctacctggccgaatcaccgtcgtcaccatcagccgtggctggggtctttccggtacgcttccagtagagtttggcgacctcccttatcttaacttcctct |
7731448 |
T |
|
| Q |
119 |
cattggccgaaatgcccaaagtaactgggcctattcctaactctttcaacaaactccaaagactacaaaaactcgaccttggttccaacagtcttagtgg |
218 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| || ||||||||||| | ||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7731447 |
cattagccgaaatgccgaaagtaactgggccaatccctaactcttttagcaaactcaaaagactacaaaaacttgaccttggttccaacagtcttagtgg |
7731348 |
T |
|
| Q |
219 |
gtcgatccccactttcctaggccaattgaagggcttacaggagtttgatttgtctaacaataagttaaccggtgttattccggcgtcattcggctcccta |
318 |
Q |
| |
|
| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||| || |
|
|
| T |
7731347 |
gccgatccccacttttctaggccagttgaagggcttacaggagtttgatttgtctaacaaccagttatccggtgttattccggcgtcgttcggctccata |
7731248 |
T |
|
| Q |
319 |
ccgtctctttcccagtttaacgtcagctttaaccaactgtgtggtgcgatacctactgggttgaacaagtttgcaaagagttcgtttgatcataataaat |
418 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||| || |||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7731247 |
ccgtctctttcgcagtttaatgtcagctttaaccaactgtgtggtgctatccctactggattgagcaagtttgcaaagagttcgtttgatcataataaat |
7731148 |
T |
|
| Q |
419 |
gcctctgtg |
427 |
Q |
| |
|
|||| |||| |
|
|
| T |
7731147 |
gcctttgtg |
7731139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 22 - 427
Target Start/End: Complemental strand, 7699522 - 7699117
Alignment:
| Q |
22 |
cctggccgaatcaccgttgtcacaatcagccgtggctggggtctttccggtatgctaccagcggactttggcgaccttccatatcttaacttcctctcat |
121 |
Q |
| |
|
||||||||| ||||||| ||||| |||||||||||||||||||||||||||| ||| |||||||| |||||| |||| || ||||||| | | ||||||| |
|
|
| T |
7699522 |
cctggccgagtcaccgtcgtcaccatcagccgtggctggggtctttccggtacgcttccagcggagtttggcaacctcccttatcttagcatgctctcat |
7699423 |
T |
|
| Q |
122 |
tggccgaaatgcccaaagtaactgggcctattcctaactctttcaacaaactccaaagactacaaaaactcgaccttggttccaacagtcttagtgggtc |
221 |
Q |
| |
|
||||||||||||| |||||||||||||| || ||||||||||| | ||||||||||||||||||||| || ||||||||||||||||| ||||||||| | |
|
|
| T |
7699422 |
tggccgaaatgccgaaagtaactgggccaatccctaactcttttagcaaactccaaagactacaaaatctagaccttggttccaacagccttagtgggcc |
7699323 |
T |
|
| Q |
222 |
gatccccactttcctaggccaattgaagggcttacaggagtttgatttgtctaacaataagttaaccggtgttattccggcgtcattcggctccctaccg |
321 |
Q |
| |
|
|||||| | || |||||| | |||||| || || ||||| |||||||||||||||| |||||| |||| ||||||||||||| ||||| ||||| |
|
|
| T |
7699322 |
aatcccctcctttctaggcaagttgaagcgcctaaaggaggttgatttgtctaacaacaagttatccggcactattccggcgtcactcggcaacctacaa |
7699223 |
T |
|
| Q |
322 |
tctctttcccagtttaacgtcagctttaaccaactgtgtggtgcgatacctactgggttgaacaagtttgcaaagagttcgtttgatcataataaatgcc |
421 |
Q |
| |
|
|||||||| |||||||| || ||||||||||| || |||||||| || ||| |||||||||| |||||| |||| | |||||| ||||||||||||| |
|
|
| T |
7699222 |
tctctttcgcagtttaatgttagctttaaccagctctgtggtgcaattcctgctgggttgaagaagtttaacaagaatgtgtttgagcataataaatgcc |
7699123 |
T |
|
| Q |
422 |
tctgtg |
427 |
Q |
| |
|
| |||| |
|
|
| T |
7699122 |
tttgtg |
7699117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 22 - 427
Target Start/End: Complemental strand, 7713867 - 7713462
Alignment:
| Q |
22 |
cctggccgaatcaccgttgtcacaatcagccgtggctggggtctttccggtatgctaccagcggactttggcgaccttccatatcttaacttcctctcat |
121 |
Q |
| |
|
||||||||| |||||| ||||| ||| |||||||||||||||||||||||| || |||||||| ||||||||||| || ||||||| | | ||||||| |
|
|
| T |
7713867 |
cctggccgagtcaccggcgtcaccatcggccgtggctggggtctttccggtacacttccagcggagtttggcgacctcccttatcttagcatgctctcat |
7713768 |
T |
|
| Q |
122 |
tggccgaaatgcccaaagtaactgggcctattcctaactctttcaacaaactccaaagactacaaaaactcgaccttggttccaacagtcttagtgggtc |
221 |
Q |
| |
|
||||||||||||| |||||||||||||| || ||||||||||||| ||||||| |||||||| |||| ||||||||||| |||||||| ||||||||| | |
|
|
| T |
7713767 |
tggccgaaatgccgaaagtaactgggccaatccctaactctttcagcaaactcaaaagactagaaaatctcgaccttggctccaacagccttagtgggcc |
7713668 |
T |
|
| Q |
222 |
gatccccactttcctaggccaattgaagggcttacaggagtttgatttgtctaacaataagttaaccggtgttattccggcgtcattcggctccctaccg |
321 |
Q |
| |
|
||||| || || ||| | |||||| || | || ||| |||||||||| ||||| |||||| |||||| |||||||||||| ||| | ||||| | |
|
|
| T |
7713667 |
aatccctgaatttctgggcaagttgaagcgcctccaagaggttgatttgtccaacaacaagttatccggtgctattccggcgtcgctcgacaacctacag |
7713568 |
T |
|
| Q |
322 |
tctctttcccagtttaacgtcagctttaaccaactgtgtggtgcgatacctactgggttgaacaagtttgcaaagagttcgtttgatcataataaatgcc |
421 |
Q |
| |
|
|||||||| ||||| || || ||||||||||| || ||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7713567 |
tctctttcgcagttcaatgttagctttaaccagctctgtggtgcgatccctactgggttgagcaagtttgcaaagagttcgtttgagcataataaatgcc |
7713468 |
T |
|
| Q |
422 |
tctgtg |
427 |
Q |
| |
|
| |||| |
|
|
| T |
7713467 |
tttgtg |
7713462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 140 - 427
Target Start/End: Original strand, 12908070 - 12908357
Alignment:
| Q |
140 |
taactgggcctattcctaactctttcaacaaactccaaagactacaaaaactcgaccttggttccaacagtcttagtgggtcgatccccactttcctagg |
239 |
Q |
| |
|
|||||||||| || ||||||||||||| ||||||| ||| | | | || ||| | ||| ||||||| |||||||| |||||||||| |||||||| |
|
|
| T |
12908070 |
taactgggccaatccctaactctttcagcaaactcaaaaaattgcgaagcctcaaacttaactccaacaaccttagtggcccgatccccaccttcctagg |
12908169 |
T |
|
| Q |
240 |
ccaattgaagggcttacaggagtttgatttgtctaacaataagttaaccggtgttattccggcgtcattcggctccctaccgtctctttcccagtttaac |
339 |
Q |
| |
|
|| |||||| ||||| | ||| |||||||||||||||| |||||| ||||||||||||| ||||| ||| | ||||||||||||| |||||||| || |
|
|
| T |
12908170 |
ccggttgaagcgcttagaagaggttgatttgtctaacaacaagttatccggtgttattccagcgtcgctcgccaccctaccgtctctctcccagttgaat |
12908269 |
T |
|
| Q |
340 |
gtcagctttaaccaactgtgtggtgcgatacctactgggttgaacaagtttgcaaagagttcgtttgatcataataaatgcctctgtg |
427 |
Q |
| |
|
|| |||| |||||| ||||||||||||||||||||||||||||| ||||| | |||||| |||||| |||||||||||||| |||| |
|
|
| T |
12908270 |
gttagctctaaccatctgtgtggtgcgatacctactgggttgaagaagttggagaagagtatgtttgagcataataaatgcctttgtg |
12908357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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