View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10521_low_32 (Length: 259)
Name: NF10521_low_32
Description: NF10521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10521_low_32 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 196569 - 196774
Alignment:
| Q |
15 |
catcaagaaaatagaatgtgtggtttagcattgaacaccttttggtttggacaaaaaactccaacttttctttttgaaaaaacaaagtcaagctaaaggg |
114 |
Q |
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| T |
196569 |
catcaagaaaatagaatgtgtggtttagcattgaacaccttttgatttggacaaaaaactccaacttttctttttgaaaaaacaaagtcaagctaaaggg |
196668 |
T |
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| Q |
115 |
taagtttgtaatttgattannnnnnncattaatgcgttaattaagctcttcttctctaacctactttgtcattcattaggagcatcaccttgttcagacc |
214 |
Q |
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| T |
196669 |
taagtttgtaatttgattatttttttcattaatgcgttaatcaagctcttcttctctaacctactttgtcattcattaggagcatcaccttgttcagacc |
196768 |
T |
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| Q |
215 |
ttcttc |
220 |
Q |
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|||||| |
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| T |
196769 |
ttcttc |
196774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 197283 - 197214
Alignment:
| Q |
22 |
aaaatagaatgtgtggtttagcattgaacaccttttggtttggacaaaaaactccaacttttctttttga |
91 |
Q |
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| T |
197283 |
aaaatagaaggtgtgttttagcattgaacaccttttgatttagagaaaaaactccaactttccttcttga |
197214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 15 - 133
Target Start/End: Original strand, 45436671 - 45436787
Alignment:
| Q |
15 |
catcaagaaaatagaatgtgtggtttagcattgaacaccttttggtttggacaaaaaactccaacttttctttttgaaaaaacaaagtcaagctaaaggg |
114 |
Q |
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| T |
45436671 |
catcaagaaaatagaatgtgtgttttagcattgaacaccttttggtttggataaaaaactccaacttttctttttg--aaatcaaagtcaagctaaaggg |
45436768 |
T |
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| Q |
115 |
taagtttgtaatttgatta |
133 |
Q |
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| T |
45436769 |
caagtttgtaatttgatta |
45436787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 31919520 - 31919459
Alignment:
| Q |
33 |
tgtggtttagcattgaacaccttttggtttggacaaaaaactccaacttttctttttgaaaa |
94 |
Q |
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| T |
31919520 |
tgtgttttagcattgaacacctttttatttagacaaaaaacccttacttttctttttaaaaa |
31919459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 18343391 - 18343327
Alignment:
| Q |
32 |
gtgtggtttagcattgaacacc-ttttggtttggacaaaaa-actccaacttttctttttgaaaa |
94 |
Q |
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| T |
18343391 |
gtgtgttttagcattgaacaccttttttgtttggacaaaaacaccccaactttcctttttaaaaa |
18343327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 1297267 - 1297323
Alignment:
| Q |
32 |
gtgtggtttagcattgaacacctt-ttggtttggacaaaaaactccaacttttcttt |
87 |
Q |
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| T |
1297267 |
gtgtgttttagcattgaacaccttctttatttggacaaaacactccaactttccttt |
1297323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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