View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10521_low_34 (Length: 251)
Name: NF10521_low_34
Description: NF10521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10521_low_34 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 66 - 240
Target Start/End: Complemental strand, 37357395 - 37357213
Alignment:
| Q |
66 |
acagcaatgatacatgaacacaaaaaa-----------acagacaccaccgtattttatacggtatttttccttcnnnnnnnnnnncattttctttccct |
154 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
37357395 |
acagcaatgatacatgaacacaaaaaaacatacacaatacagacaccaccgtattttatacagtatttttcctt---tttttttttcattttctttccct |
37357299 |
T |
|
| Q |
155 |
attaatcgatttctctcattccctccactgtttgtttctctctcatagctcacaccaccaccattacacaatctcacccatgttca |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37357298 |
gttaatcgatttctctcattccctccactgtttgtttctctctcatagctcacaccaccaccattacacaatctcacccatgttca |
37357213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 4074849 - 4074793
Alignment:
| Q |
1 |
aaaaacaacataaacttttattataagttctcataatcagtttgacaaaactcatat |
57 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4074849 |
aaaaacaacataaacttttattataagttctcataatcagtttgacaaaactcatat |
4074793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 25878283 - 25878231
Alignment:
| Q |
166 |
tctctcattccctccactgtttgtttctctctcatagctcacaccaccaccat |
218 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25878283 |
tctctcactccctccgctgtttgtttctctcacatagctcacaccaccaccat |
25878231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University