View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10521_low_38 (Length: 244)
Name: NF10521_low_38
Description: NF10521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10521_low_38 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 36246449 - 36246230
Alignment:
| Q |
18 |
tcttaatcataatgaaaattaatatgtatttaactcactgttacacatgtagataaattgattaaaatttatatactgagagacttaattattattactt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36246449 |
tcttaatcataatgaaaattaatatgtatttaactcattgttacacatgtagataaattgattaaaatttatatactgagagacttaattattattactt |
36246350 |
T |
|
| Q |
118 |
gttgccaagtatgctatgcagctgaattatggtttcttcttcttcaaaagagaatcgtcctctctttatatccggttggagatagtttgtccaacgtaga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
36246349 |
gttgccaagtatgctatgcagctgaattatggtttcttcttcttcaaaagagaatcgtcctctctttatatccggtcggagatagtttgtccaacgtaga |
36246250 |
T |
|
| Q |
218 |
cgacaactctttccacatct |
237 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
36246249 |
cgacaactctttccacatct |
36246230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 112 - 237
Target Start/End: Original strand, 2892440 - 2892565
Alignment:
| Q |
112 |
ttacttgttgccaagtatgctatgcagctgaattatggtttcttcttcttcaaaagagaatcgtcctctctttatatccggttggagatagtttgtccaa |
211 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| || || ||||| |||||||| || || || || | |||||||| ||| ||||||||||||||||| |
|
|
| T |
2892440 |
ttacttgttgccaagaatgctatgtagctgaataattgtctcttcctcttcaaatgaaaaccgaccacgttttatatctggtcggagatagtttgtccaa |
2892539 |
T |
|
| Q |
212 |
cgtagacgacaactctttccacatct |
237 |
Q |
| |
|
|| ||||||||||| || |||||||| |
|
|
| T |
2892540 |
cggagacgacaacttttgccacatct |
2892565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 234
Target Start/End: Original strand, 37881832 - 37881914
Alignment:
| Q |
152 |
tcttcttcttcaaaagagaatcgtcctctctttatatccggttggagatagtttgtccaacgtagacgacaactctttccaca |
234 |
Q |
| |
|
|||||||||||||| ||||| | ||||||||| ||||| ||| | |||||||||||| || |||||||||||||| ||||| |
|
|
| T |
37881832 |
tcttcttcttcaaaggagaaccttcctctcttgatatcaggtctcaaatagtttgtccatcgaagacgacaactcttaccaca |
37881914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University