View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10521_low_4 (Length: 429)
Name: NF10521_low_4
Description: NF10521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10521_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 17 - 415
Target Start/End: Original strand, 330521 - 330919
Alignment:
| Q |
17 |
atgctatgtcagatatcagtcatgtgagtagtgcatgttccttaactaatcttgatgctcaagataagcaactgccaagttcaagtcatagtcgtagcca |
116 |
Q |
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| T |
330521 |
atgctatgtcagatatcagtcatgtgagtagtgcatgttccttaactaatcttgatgctcaagataagcaactgccaagttcaagtcatagtcgtagcca |
330620 |
T |
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| Q |
117 |
aactgctgacatggtattgtttttacaaattcattttttatttagtaggattaggattatatttgaaatgtaaatttataaatatagctgaaactttcct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
330621 |
aactgctgacatggtattgtttttacaaattcattttttatttagtaggattaggattatatttgaaatgtaaatttataaatatagctgaaactttcct |
330720 |
T |
|
| Q |
217 |
ttctcttatttttcattgttaacaagaaaattttgttattgagttagttctaatggctaactcnnnnnnnggtaaaagttctaatggctccttctttaca |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||| |||||||||| |
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| T |
330721 |
ttctcttatttttcattgttaacaagaaaattttgttattgaggtagttctaatggctaactctttttttggtacaagttctaatggcttcttctttaca |
330820 |
T |
|
| Q |
317 |
ggaggaaagtgatgaaatgcataatcaactagcttctgttccggaagttgattccacaataaacgatgtcaagtatgtctctaacacatgtgtgatgtc |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
330821 |
ggaggaaagtgatgaaatgcataatcaactagcttctgttccggaagttgattccacaataaacgatgtcaagtatgtctctaacacatgtgtgatgtc |
330919 |
T |
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