View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10521_low_40 (Length: 240)
Name: NF10521_low_40
Description: NF10521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10521_low_40 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 51761791 - 51762013
Alignment:
| Q |
18 |
agtatcactcacactctcaccctttccgtttacctcaagaaaaccctaaaatccaatatggtagcagggtccacaaccacttctagaactcgagttgctt |
117 |
Q |
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| T |
51761791 |
agtatcactcacactctcaccctttccgtttacctcaagaaaaccctaaaatccaatatggtagcagggtccacaaccacttctagaactcgagttgctt |
51761890 |
T |
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| Q |
118 |
tgagggactgcgttactcaaatttcagactcggttcttcagttaaaccaaacgttgaacgagttaaaacatcttcgcatgggaacgtttgagtggcaaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51761891 |
tgagggactgcgttactcaaatttcagactcggttcttcagttaaaccaaacgttgaacgagttaaaacatcttcgcatgggaacgtttgagtggcaaat |
51761990 |
T |
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| Q |
218 |
gagtaacgctcaaacatgggcca |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
51761991 |
gagtaacgctcaaacatgggcca |
51762013 |
T |
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