View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10521_low_42 (Length: 240)
Name: NF10521_low_42
Description: NF10521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10521_low_42 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 64 - 240
Target Start/End: Complemental strand, 35520421 - 35520244
Alignment:
| Q |
64 |
ttcttctttgaaatagcttcatta-acccttttatactattattggtttcactaatttcacgatcacccctatgatcatcaatatcacctttgagcctat |
162 |
Q |
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|||||| ||||| || |||||||| ||||| ||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||| | |||||||||| |
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| T |
35520421 |
ttcttcgttgaactatcttcattagaccctcttatactattattggtttcactaatttcatgatcaaccctttgatcatcaatatcatccttgagcctat |
35520322 |
T |
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| Q |
163 |
aattaatgttactattatagctttcaccaaaccattccaatggttctgagtcattattagaaaatatgctttgacctc |
240 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35520321 |
aattaatgttactattatagctttcaccaaaccaatccaatggttctgactcattattagaaaatatgctttgacctc |
35520244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 64 - 240
Target Start/End: Complemental strand, 35536519 - 35536342
Alignment:
| Q |
64 |
ttcttctttgaaatagcttcatta-acccttttatactattattggtttcactaatttcacgatcacccctatgatcatcaatatcacctttgagcctat |
162 |
Q |
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|||||| |||||||| |||||||| || || ||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||| | |||||||||| |
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| T |
35536519 |
ttcttcgttgaaatatcttcattagactctcttatactattattggtttcactaatttcatgatcaaccctttgatcatcaatatcatccttgagcctat |
35536420 |
T |
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| Q |
163 |
aattaatgttactattatagctttcaccaaaccattccaatggttctgagtcattattagaaaatatgctttgacctc |
240 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||| |
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| T |
35536419 |
aattaatgttactattatagctttcaccaaaccaatccaatggttctgactcgttattagaaaatatgctttgacctc |
35536342 |
T |
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