View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10521_low_43 (Length: 240)
Name: NF10521_low_43
Description: NF10521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10521_low_43 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 4075129 - 4074906
Alignment:
| Q |
17 |
aaattcaagtacattatgatcatgttatggtggttttctatggggtatttggaggttcttaatacaattgaggttgcaattatagaggtgggattttgga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4075129 |
aaattcaagtacattatgatcatgttatgttggttttctatggggtgtttggaggtccttaattcaattgaggttgcaattatagaggtgggattttgga |
4075030 |
T |
|
| Q |
117 |
tatgtttggataaacaatttatttgaagcttataagacaggtgtttatcatgataaatgttgatgtataagattataagttattcgtatagcaaaaaatc |
216 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
4075029 |
tatgtttggataaacaatttatatgaagcttataagacaggtgtttatcatgataaatgttgatttataagattataagttatttctatagcaaaaaatc |
4074930 |
T |
|
| Q |
217 |
aatttaaattaaattgttttatat |
240 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
4074929 |
aatttaaattaaattgttttatat |
4074906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 7043911 - 7043843
Alignment:
| Q |
119 |
tgtttggataaacaatttatttgaagcttataagacaggtgtttatcatgataaatgttgatgtataag |
187 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||| | || ||||||||| ||||| | | ||||||||| |
|
|
| T |
7043911 |
tgtttggataaacaacttatttgcagcttataacatagatgtttatcacaataaacgcttatgtataag |
7043843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 16938066 - 16938013
Alignment:
| Q |
119 |
tgtttggataaacaatttatttgaagcttataagacaggtgtttatcatgataa |
172 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
16938066 |
tgtttggacaaacaacttatttgaagcttataacacaagtgtttatcatgataa |
16938013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 9202937 - 9202884
Alignment:
| Q |
119 |
tgtttggataaacaatttatttgaagcttataagacaggtgtttatcatgataa |
172 |
Q |
| |
|
|||||||||||||| ||||||| |||||||| ||| |||||||||||||||| |
|
|
| T |
9202937 |
tgtttggataaacatcttatttgcagcttatagcacaagtgtttatcatgataa |
9202884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 12433574 - 12433521
Alignment:
| Q |
114 |
ggatatgtttggataaacaatttatttgaagcttataagacaggtgtttatcat |
167 |
Q |
| |
|
|||| ||||||||||||||| ||||||| ||||||||| ||| | ||||||||| |
|
|
| T |
12433574 |
ggatctgtttggataaacaacttatttgcagcttataacacaagcgtttatcat |
12433521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 51688576 - 51688644
Alignment:
| Q |
119 |
tgtttggataaacaatttatttgaagcttataagacaggtgtttatcatgataaatgttgatgtataag |
187 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| ||| ||| |||||||||||| |||| || |||||| |
|
|
| T |
51688576 |
tgtttggataaacaacttatttgcagcttatagtacaagtgcttatcatgataagtgtttatatataag |
51688644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 5894352 - 5894299
Alignment:
| Q |
119 |
tgtttggataaacaatttatttgaagcttataagacaggtgtttatcatgataa |
172 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||| ||| |||||||||||| |
|
|
| T |
5894352 |
tgtttggataaacagcttatttgaagcttatagcacaagtgcttatcatgataa |
5894299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 47499032 - 47498979
Alignment:
| Q |
119 |
tgtttggataaacaatttatttgaagcttataagacaggtgtttatcatgataa |
172 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| ||| ||| |||||||||||| |
|
|
| T |
47499032 |
tgtttggataaacaacttatttgcagcttatagcacaagtgcttatcatgataa |
47498979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 33541906 - 33541854
Alignment:
| Q |
120 |
gtttggataaacaatttatttgaagcttataagacaggtgtttatcatgataa |
172 |
Q |
| |
|
|||||||||||||| ||||||| || ||||| ||| |||||||||||||||| |
|
|
| T |
33541906 |
gtttggataaacaacttatttgcagtttatagcacaagtgtttatcatgataa |
33541854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 27863896 - 27863843
Alignment:
| Q |
119 |
tgtttggataaacaatttatttgaagcttataagacaggtgtttatcatgataa |
172 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| ||| ||| |||||||||||| |
|
|
| T |
27863896 |
tgtttggataaacaacttatttgtagcttatagcacaagtgcttatcatgataa |
27863843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 152
Target Start/End: Complemental strand, 1203301 - 1203268
Alignment:
| Q |
119 |
tgtttggataaacaatttatttgaagcttataag |
152 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
1203301 |
tgtttggataaacaatttatttgcagcttataag |
1203268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 1432986 - 1433043
Alignment:
| Q |
116 |
atatgtttggataaacaatttatttgaagcttataagacaggtgtttatcatgataaa |
173 |
Q |
| |
|
|||||||||||||||||| |||||| ||| |||||| ||| ||||||||| |||||| |
|
|
| T |
1432986 |
atatgtttggataaacaacttatttaaagtttataacacaaatgtttatcacgataaa |
1433043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 34235265 - 34235212
Alignment:
| Q |
119 |
tgtttggataaacaatttatttgaagcttataagacaggtgtttatcatgataa |
172 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| ||| ||| |||||||||||| |
|
|
| T |
34235265 |
tgtttggataaacaacttatttgtagcttatagtacatgtgcttatcatgataa |
34235212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University