View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10521_low_46 (Length: 239)
Name: NF10521_low_46
Description: NF10521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10521_low_46 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 34955639 - 34955837
Alignment:
| Q |
1 |
tacataacttaaatatttcatagacaagtacctcaaattttcatttgttgtactcaaagattcatgtgatttattgtgtacctcgtttgtgaccatttca |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34955639 |
tacataacctaaatatttcatagacaagtacctcaaattttcatttgttgtactcaaagattcatgt------ttgtgtacctcgtttgtgaccatttca |
34955732 |
T |
|
| Q |
101 |
tcttcaaggtgaaatcgatcaacaataatgaaagggtttcgagaagcaagacgtgcatgtgaagacgcgattttatctaaatcaattttgagccttgacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34955733 |
tcttcaaggtgaaatcgatcaacaataatgaaagggtttcgagaagcaagacgtgcatgtgaagacgcgattttatctaaatcaattttgagccttgacc |
34955832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 55 - 205
Target Start/End: Original strand, 34974152 - 34974299
Alignment:
| Q |
55 |
caaagattcatgtgatttattgtgtacctcgtttgtgaccatttcatcttcaaggtgaaatcgatcaacaataatgaaagggtttcgagaagcaagacgt |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||| | | | ||||| |||||| |||| ||||||||||||| |
|
|
| T |
34974152 |
caaagattcatgtgatttattgtgtacctcatttgtgaccatttcaacttcaagatgaatttgtt---caatattgaaagtgtttatagaagcaagacgt |
34974248 |
T |
|
| Q |
155 |
gcatgtgaagacgcgattttatctaaatcaattttgagccttgacctaatg |
205 |
Q |
| |
|
||||| ||||| || |||||||||| ||| |||||||||||||||||||| |
|
|
| T |
34974249 |
gcatgagaagaagcaattttatctagctcagttttgagccttgacctaatg |
34974299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 34974050 - 34974115
Alignment:
| Q |
1 |
tacataacttaaatatttcatagacaagtacctcaaattttcatttgttgtactcaaagattcatg |
66 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34974050 |
tacataacccaaatatttcatagacaaatacctcaaattttcatttgttgtactcaaagattcatg |
34974115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 35034805 - 35034867
Alignment:
| Q |
11 |
aaatatttcatagacaagtacctcaaattttcatttgttgtactcaaagattcatgtgattta |
73 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||| |||||||| | ||||||||||||| |
|
|
| T |
35034805 |
aaatatttcatagacaaatacctcaaattttcacttgtggtactcaatggttcatgtgattta |
35034867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 193
Target Start/End: Original strand, 35034907 - 35035011
Alignment:
| Q |
86 |
tttgtgaccatttcatcttcaaggtgaaatcgatcaacaataatgaaagggtttcgagaagcaagacgtgcatgtgaagacgcgattttatctaaatcaa |
185 |
Q |
| |
|
||||||||||||||| |||||| |||| | |||||||||| ||| |||||| | |||||| ||||||||| ||||| |||||||| ||| |||| |
|
|
| T |
35034907 |
tttgtgaccatttcaacttcaatctgaatttgatcaacaatgatg---gggtttgcaaaagcaaaacgtgcatgagaagaatcgattttacctagatcag |
35035003 |
T |
|
| Q |
186 |
ttttgagc |
193 |
Q |
| |
|
|||||||| |
|
|
| T |
35035004 |
ttttgagc |
35035011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University