View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10521_low_47 (Length: 239)
Name: NF10521_low_47
Description: NF10521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10521_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 35946236 - 35946010
Alignment:
| Q |
1 |
tactatatataacttgctattttggattttattctctcacacacatatttcaggggacattggaaagaagtaaatttcaaagttaggcatttcatttatc |
100 |
Q |
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| T |
35946236 |
tactatatataacttgctattttggattttattctctcacacacatatttcaggggacattggaaagaagtaaatttcaaagttaggcatttcatttatc |
35946137 |
T |
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| Q |
101 |
atttaattatgaacaaataacttcttaattttaagccttttgtgagtttttcaacnnnnnnnnctccttaattttaagcc--tatatataattcgattag |
198 |
Q |
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| T |
35946136 |
atttaattatgaacaaataacttcttaattttaagccttttgtgagtttttcaacaaaaaaaactccttaattttaagcctatatatataattcgattag |
35946037 |
T |
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| Q |
199 |
atgaaatagataaccgattaagatatt |
225 |
Q |
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||||||||||||||||||||||||||| |
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| T |
35946036 |
atgaaatagataaccgattaagatatt |
35946010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 35952408 - 35952371
Alignment:
| Q |
6 |
tatataacttgctattttggattttattctctcacaca |
43 |
Q |
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||||||||||||||||||||||||||| ||||| |||| |
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| T |
35952408 |
tatataacttgctattttggattttatcctctctcaca |
35952371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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