View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10521_low_5 (Length: 408)
Name: NF10521_low_5
Description: NF10521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10521_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 17 - 395
Target Start/End: Original strand, 26484739 - 26485116
Alignment:
| Q |
17 |
aaatttaaggttgtatcagctacatttgaccgtaattaaagcttatgagtcaacatttgaccgcgattatccacagtatcgcgaatcacaacacagccat |
116 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26484739 |
aaatttaaggctgtatcagctacatttgaccgtaattaaagcttatgagtcaacatttgaccgcgattatccacagtatcgcgaatcacaacacagccat |
26484838 |
T |
|
| Q |
117 |
aaattattttagaatgcatgctgaaagtgctcctaaattatttcatctttacaggtgtttactcaaaattttcaaatgatgcaatcggaaatgtctaacc |
216 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26484839 |
aaattattttagaatgcatgctgaa-gtgctcctaaattatttgatctttacaggtgtttactcaaaattttcaaatgatgcaatcggaaatgtctaacc |
26484937 |
T |
|
| Q |
217 |
ctgcatatcttcaattcaattcagcacaacaacaagtttcatgttgtggtggattgataaacaatatggggatagttcctccggaaattggggttcgaag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
26484938 |
ctgcatatcttcaattcaattcagcacaacaacaagtttcatgttgtggtggattgataaacaatatggggatactccctccggaaattggggttcgaag |
26485037 |
T |
|
| Q |
317 |
gaacattaatgcaccggcatctgcatctttacctgaaatctttctcgacccatcatgtttcactgtatgtttcctctct |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26485038 |
gaacattaatgcaccggcatctgcatctttacctgaaatctttctcgacccatcatgtttcactgtatgtttcctctct |
26485116 |
T |
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