View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10521_low_50 (Length: 236)

Name: NF10521_low_50
Description: NF10521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10521_low_50
NF10521_low_50
[»] chr6 (1 HSPs)
chr6 (13-223)||(17933283-17933494)
[»] chr3 (3 HSPs)
chr3 (13-223)||(32844307-32844520)
chr3 (40-117)||(23876952-23877029)
chr3 (67-115)||(25535250-25535298)
[»] chr8 (1 HSPs)
chr8 (48-106)||(11788405-11788463)
[»] chr7 (2 HSPs)
chr7 (52-117)||(366771-366836)
chr7 (48-117)||(7401966-7402035)
[»] chr1 (1 HSPs)
chr1 (52-102)||(42559898-42559948)
[»] chr5 (1 HSPs)
chr5 (52-117)||(27075893-27075958)


Alignment Details
Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 17933494 - 17933283
Alignment:
Q  13 tggacatcacagtatatcatgcacattgacacattagcatcactaacagagagattggacagagggatgaatttgactgacgtgtgttaaattcagggac 112  Q
    |||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  17933494 tggacatcacaacacatcatgcacattgacacattagcatcactaacagagagattggacagagggatgaatttgacggacatgtgttaaattcagggac 17933395  T
Q  113 taattaaaggacgaatttgattagtccttacaaactcaaggacgaagttgatgtttcactccta-nnnnnnnnggtttgacactttgtgattcatacctt 211  Q
    |||||  |||||||||||||||| ||||| |||||||||| |||||| ||||||||||||||||         |||||||||||||||||||||| ||||    
T  17933394 taattggaggacgaatttgattaatccttgcaaactcaagaacgaaggtgatgtttcactcctatttttttttggtttgacactttgtgattcatgcctt 17933295  T
Q  212 tgttagcctttg 223  Q
    ||||||||||||    
T  17933294 tgttagcctttg 17933283  T

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Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 223
Target Start/End: Original strand, 32844307 - 32844520
Alignment:
Q  13 tggacatcacagtatatcatgcacattgacacattagcatcactaacagagagattggacagagggatgaatttgactgacgtgtgttaaattcagggac 112  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||| ||||||    
T  32844307 tggacatcacagcacatcatgcacattgacacattagcatcactaacagagagattgggcagagggatgaatttgacggacatgtgttaaatttagggac 32844406  T
Q  113 taattaaaggacgaatttgattagtccttacaaactcaaggacgaagttgatgtttcactcc---tannnnnnnnggtttgacactttgtgattcatacc 209  Q
    |||||  |||||||||||||||| ||||| |||||||||||||||||||||||||||| |||   |         |||||||||||| ||||||||| ||    
T  32844407 taattggaggacgaatttgattaatccttgcaaactcaaggacgaagttgatgtttcattcctttttttttttttggtttgacacttagtgattcatgcc 32844506  T
Q  210 tttgttagcctttg 223  Q
    ||||||||||||||    
T  32844507 tttgttagcctttg 32844520  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 40 - 117
Target Start/End: Original strand, 23876952 - 23877029
Alignment:
Q  40 gacacattagcatcactaacagagagattggacagagggatgaatttgactgacgtgtgttaaattcagggactaatt 117  Q
    ||||| ||||| |||||||| ||| |||||||| |||||||||||||||  ||||| |||||||||||| ||||||||    
T  23876952 gacacgttagcctcactaacggagggattggacggagggatgaatttgatggacgtttgttaaattcagagactaatt 23877029  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 25535250 - 25535298
Alignment:
Q  67 ttggacagagggatgaatttgactgacgtgtgttaaattcagggactaa 115  Q
    |||||| ||||||||||||||   ||||| |||||||||||||||||||    
T  25535250 ttggacggagggatgaatttggtggacgtctgttaaattcagggactaa 25535298  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 11788463 - 11788405
Alignment:
Q  48 agcatcactaacagagagattggacagagggatgaatttgactgacgtgtgttaaattc 106  Q
    ||||||||||||||||| ||||||| |||||||||||||||  ||||| ||||||||||    
T  11788463 agcatcactaacagagatattggacggagggatgaatttgatggacgtctgttaaattc 11788405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 366836 - 366771
Alignment:
Q  52 tcactaacagagagattggacagagggatgaatttgactgacgtgtgttaaattcagggactaatt 117  Q
    |||||||| | | |||||||| |||||||||||||||  ||||| |||||||||||||||||||||    
T  366836 tcactaacggtgggattggacggagggatgaatttgatagacgtctgttaaattcagggactaatt 366771  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 7402035 - 7401966
Alignment:
Q  48 agcatcactaacagagagattggacagagggatgaatttgactgacgtgtgttaaattcagggactaatt 117  Q
    |||||||||||| |||| ||||||  ||| |||||||||||  ||||| |||||||||||||||| ||||    
T  7402035 agcatcactaacggagatattggatggagtgatgaatttgatggacgtctgttaaattcagggacgaatt 7401966  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 42559898 - 42559948
Alignment:
Q  52 tcactaacagagagattggacagagggatgaatttgactgacgtgtgttaa 102  Q
    ||||||||||||||||||||| |||||||||||||||  ||||| ||||||    
T  42559898 tcactaacagagagattggacggagggatgaatttgatggacgtctgttaa 42559948  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 27075958 - 27075893
Alignment:
Q  52 tcactaacagagagattggacagagggatgaatttgactgacgtgtgttaaattcagggactaatt 117  Q
    |||||||| | | ||||| || |||||||||||||||  ||||| ||||||||||||| |||||||    
T  27075958 tcactaacggggggattgaacggagggatgaatttgatggacgtctgttaaattcaggaactaatt 27075893  T

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