View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10521_low_51 (Length: 234)
Name: NF10521_low_51
Description: NF10521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10521_low_51 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 16 - 216
Target Start/End: Complemental strand, 6492601 - 6492401
Alignment:
| Q |
16 |
aagaaacatagaaatattagagaattatactcgtcttgatttactgcctcttttctggacattataattacaaatattggagtatttggtgaataatgat |
115 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6492601 |
aagaaacatggaaatagtagagaattatactcgtcttgatttactgcctcttttctggacattataattacaaatattggagtatttggtgaataatgat |
6492502 |
T |
|
| Q |
116 |
gattaacatgatatatgaattatgagtaatttgaattctataaagcatgtttccctttccctnnnnnnnnntagaataaagcatgtttcccggtccgtaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
6492501 |
gattaacatgatatatgaattatgagtaatttgaattctataaagcatgtttccctttccctaaaaaaaaatagaataaagcatgtttcccagtccgtaa |
6492402 |
T |
|
| Q |
216 |
t |
216 |
Q |
| |
|
| |
|
|
| T |
6492401 |
t |
6492401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University