View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10521_low_52 (Length: 234)
Name: NF10521_low_52
Description: NF10521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10521_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 15 - 216
Target Start/End: Original strand, 155092 - 155293
Alignment:
| Q |
15 |
caaaggtgtttatgatcagattgtggcgttgaagggactaccttatatggaagcacatgcagagccatacatgaggaatttagttgcaggggatgttgtt |
114 |
Q |
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| T |
155092 |
caaaggtgtttatgatcagattgtggcgttgaagggactaccttatatggaagcacatgcagagccatacatgaggaatttagttgcaggggatgttgtt |
155191 |
T |
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| Q |
115 |
tctggtccactgttttctttttgtgggatcgaaaaagtggggaatatattgcacgctttgaaagtgacagaacatcacggatttccagtagttgatgagc |
214 |
Q |
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| T |
155192 |
tctggtccactgttttctttttgtgggatcgaaaaagtggggaatatattgcacgctttgaaagtgacagaacatcacggatttccagtagttgatgagc |
155291 |
T |
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| Q |
215 |
ct |
216 |
Q |
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|| |
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| T |
155292 |
ct |
155293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 56469462 - 56469295
Alignment:
| Q |
15 |
caaaggtgtttatgatcagattgtggcgttgaagggactaccttatatggaagcacatgcagagccatacatgaggaatttagttgcaggggatgttgtt |
114 |
Q |
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| T |
56469462 |
caaaggtgtttatgatcaaatagtggaaatgaaggggttgccttatttggaagtgcatgcagaaccgtacatgaggcatttagttgccggtgatgttgtt |
56469363 |
T |
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| Q |
115 |
tctggtccactgttttctttttgtgggatcgaaaaagtggggaatatattgcacgctttgaaagtgac |
182 |
Q |
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| T |
56469362 |
tctggtccactgtttacattctctggtattgaaaaagtggggaatattgtgcacactttaaaggtgac |
56469295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 164
Target Start/End: Complemental strand, 24329234 - 24329119
Alignment:
| Q |
49 |
ggactaccttatatggaagcacatgcagagccatacatgaggaatttagttgcaggggatgttgtttctggtccactgttttctttttgtgggatcgaaa |
148 |
Q |
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||||| |||||| ||||||||||||| || || |||||||||||| ||| | || | |||||||| || |||||| || | | |||| ||| ||||||| |
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| T |
24329234 |
ggacttccttatttggaagcacatgccgaaccttacatgaggaatatagctacacgtgatgttgtctcgggtccattgatgaccttttctggcatcgaaa |
24329135 |
T |
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| Q |
149 |
aagtggggaatatatt |
164 |
Q |
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| T |
24329134 |
aggttgggaatatatt |
24329119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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