View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10521_low_54 (Length: 227)
Name: NF10521_low_54
Description: NF10521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10521_low_54 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 40 - 227
Target Start/End: Complemental strand, 51762200 - 51762013
Alignment:
| Q |
40 |
cagttattggaattggagtgaggcttatgattcatgctttccccaagacgattgatcaagtagagagcgttacttataaacatagatgcatcggtaactt |
139 |
Q |
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| T |
51762200 |
cagttattggaattggagtgaggcttttgattcatgctttccccaagacgattgatcaagtagagagcgttacttataaacatagatgcatcggtaactt |
51762101 |
T |
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| Q |
140 |
ttcttttcacctccaacttcaccttcttttcagcatcacttctgttcaaaccgttaatacaagagttaccgttggtaaaagcagtgct |
227 |
Q |
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| T |
51762100 |
ttcttttcacctccaacttcaccttcttttcagcatcgcttctgttcaaaccgttaatacaagagttaccgttggtaaaagcagtgct |
51762013 |
T |
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