View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10521_low_55 (Length: 221)
Name: NF10521_low_55
Description: NF10521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10521_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 39950750 - 39950951
Alignment:
| Q |
1 |
ttcaatcgaagatgttattttgcatataggaaatatgaagcacctgaatcttgggaatgagttcaaacaattcctcttgagtcttctctctgaagtcagg |
100 |
Q |
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| T |
39950750 |
ttcaattgaagatgttattttgcatataggaaatatgaagcacctgaatcttgggaatgagttcaaacaattcctcttgagtcttctctctgaagtcagg |
39950849 |
T |
|
| Q |
101 |
accttcaatagctatgccatcatctgttaaaattccacattccctagctatagcctttgcagtattaatattatctcctgtaaccattctcaccatgatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39950850 |
accttcaatagctatgccatcatctgttaaaattccacattccctagctatagcctttgcagtattaatattatctcctgtaaccattctcaccacgatt |
39950949 |
T |
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| Q |
201 |
cc |
202 |
Q |
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|| |
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| T |
39950950 |
cc |
39950951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 37 - 190
Target Start/End: Complemental strand, 5419992 - 5419839
Alignment:
| Q |
37 |
gaagcacctgaatcttgggaatgagttcaaacaattcctcttgagtcttctctctgaagtcaggaccttcaatagctatgccatcatctgttaaaattcc |
136 |
Q |
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| T |
5419992 |
gaagtacctgaattttgggaatcagttcaagcaactcttccaaactcttctctctgaattcaggaccttcaatggctatgccatcatctgttaaaatccc |
5419893 |
T |
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| Q |
137 |
acattccctagctatagcctttgcagtattaatattatctcctgtaaccattct |
190 |
Q |
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| T |
5419892 |
acattccctagctatagcctttgcagtattaatattgtcacctgtaaccattct |
5419839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 187
Target Start/End: Complemental strand, 47488400 - 47488334
Alignment:
| Q |
121 |
catctgttaaaattccacattccctagctatagcctttgcagtattaatattatctcctgtaaccat |
187 |
Q |
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|||||||||||||||||||||| ||||| || |||||||||||||| || || ||||| |||||||| |
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| T |
47488400 |
catctgttaaaattccacattctctagcaatcgcctttgcagtatttatgttgtctccggtaaccat |
47488334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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