View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10521_low_57 (Length: 214)

Name: NF10521_low_57
Description: NF10521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10521_low_57
NF10521_low_57
[»] chr1 (4 HSPs)
chr1 (94-166)||(41323360-41323433)
chr1 (93-164)||(27840307-27840379)
chr1 (96-166)||(47250287-47250358)
chr1 (93-164)||(50293627-50293699)
[»] chr2 (2 HSPs)
chr2 (111-166)||(22136277-22136333)
chr2 (169-208)||(36698746-36698785)
[»] chr8 (5 HSPs)
chr8 (94-164)||(42308123-42308194)
chr8 (95-166)||(19970426-19970498)
chr8 (95-166)||(21022311-21022383)
chr8 (110-164)||(16367861-16367916)
chr8 (110-147)||(44656387-44656424)
[»] chr3 (1 HSPs)
chr3 (113-164)||(53550730-53550781)
[»] scaffold0009 (1 HSPs)
scaffold0009 (164-208)||(143684-143731)
[»] chr5 (2 HSPs)
chr5 (113-164)||(4082576-4082628)
chr5 (113-164)||(16349715-16349767)


Alignment Details
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 41323433 - 41323360
Alignment:
Q  94 tattataatgaattgaaagtaatgtcttaaactatatatgtcccgtgcggtagca-gggtggacgatctagtat 166  Q
    ||||||||||||||| ||||||||| || ||||||||||| ||||||||| |||| || || ||||||||||||    
T  41323433 tattataatgaattgcaagtaatgtttttaactatatatgacccgtgcggcagcatggatgtacgatctagtat 41323360  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 164
Target Start/End: Complemental strand, 27840379 - 27840307
Alignment:
Q  93 atattataatgaattgaaagtaatgtcttaaactatatatgtcccgtgcggtagca-gggtggacgatctagt 164  Q
    |||||||||||||||| ||||||||| |||||||||| ||| ||||||||  |||| |||| |||||||||||    
T  27840379 atattataatgaattgcaagtaatgttttaaactataaatgacccgtgcgacagcacgggtagacgatctagt 27840307  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 47250287 - 47250358
Alignment:
Q  96 ttataatgaattgaaagtaatgtcttaaactatatatgtcccgtgcggtagc-agggtggacgatctagtat 166  Q
    ||||||||||||| ||||||||| || ||||||||||| ||||||||| |||  || |||||||||||||||    
T  47250287 ttataatgaattgcaagtaatgtttttaactatatatgacccgtgcggcagctcggatggacgatctagtat 47250358  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 164
Target Start/End: Original strand, 50293627 - 50293699
Alignment:
Q  93 atattataatgaattgaaagtaatgtcttaaactatatatgtcccgtgcggtagca-gggtggacgatctagt 164  Q
    |||||||||||||||| ||||||  |  ||||||||||||| ||||||||| |||| |||| |||||||||||    
T  50293627 atattataatgaattgcaagtaacatgctaaactatatatgacccgtgcggcagcatgggtagacgatctagt 50293699  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 22136333 - 22136277
Alignment:
Q  111 agtaatgtcttaaactatatatgtcccgtgcggtagca-gggtggacgatctagtat 166  Q
    ||||||||||||||||||||||| ||||||||| | || ||||||||||||||||||    
T  22136333 agtaatgtcttaaactatatatgacccgtgcggcaacacgggtggacgatctagtat 22136277  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 208
Target Start/End: Original strand, 36698746 - 36698785
Alignment:
Q  169 aagatcttaatctagtttattatacttatccctatgctac 208  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  36698746 aagatcttaatctagtttattatacttatccttatgctac 36698785  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 164
Target Start/End: Complemental strand, 42308194 - 42308123
Alignment:
Q  94 tattataatgaattgaaagtaatgtcttaaactatatatgtcccgtgcggtagca-gggtggacgatctagt 164  Q
    ||||||||| ||||| ||||||||| || ||||||||||| ||||||||| ||||  |||||||||||||||    
T  42308194 tattataataaattgtaagtaatgtttttaactatatatgacccgtgcggcagcacaggtggacgatctagt 42308123  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 19970426 - 19970498
Alignment:
Q  95 attataatgaattgaaagtaatgtcttaaactatatatgtcccgtgcggtagca-gggtggacgatctagtat 166  Q
    |||||||||||||| |||||||||  ||||||||||||| ||||||| |  ||| |||| |||||||||||||    
T  19970426 attataatgaattgcaagtaatgtactaaactatatatgacccgtgctgccgcacgggtagacgatctagtat 19970498  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 21022383 - 21022311
Alignment:
Q  95 attataatgaattgaaagtaatgtcttaaactatatatgtcccgtgcggtagca-gggtggacgatctagtat 166  Q
    |||||||||||||| |||||||||  ||||||||||||| ||||||| |  ||| |||| |||||||||||||    
T  21022383 attataatgaattgcaagtaatgtactaaactatatatgacccgtgctgccgcacgggtagacgatctagtat 21022311  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 164
Target Start/End: Original strand, 16367861 - 16367916
Alignment:
Q  110 aagtaatgtcttaaactatatatgtcccgtgcggtagca-gggtggacgatctagt 164  Q
    ||||||||| |||||||||||||| ||||||||| |||| |||| |||||||||||    
T  16367861 aagtaatgttttaaactatatatgacccgtgcggcagcacgggtagacgatctagt 16367916  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 44656424 - 44656387
Alignment:
Q  110 aagtaatgtcttaaactatatatgtcccgtgcggtagc 147  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  44656424 aagtaatgttttaaactatatatgacccgtgcggtagc 44656387  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 164
Target Start/End: Complemental strand, 53550781 - 53550730
Alignment:
Q  113 taatgtcttaaactatatatgtcccgtgcggtagcagggtggacgatctagt 164  Q
    |||||| |||||||||||||| | ||||| |||||||||| |||||||||||    
T  53550781 taatgttttaaactatatatgactcgtgcagtagcagggtagacgatctagt 53550730  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 143684 - 143731
Alignment:
Q  164 tatggaagatcttaatctagt---ttattatacttatccctatgctac 208  Q
    |||||||||||||||||||||   |||||||||||||||| |||||||    
T  143684 tatggaagatcttaatctagtttattattatacttatcccaatgctac 143731  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 164
Target Start/End: Original strand, 4082576 - 4082628
Alignment:
Q  113 taatgtcttaaactatatatgtcccgtgcggtagca-gggtggacgatctagt 164  Q
    |||||| || ||||||||||| ||||||||| |||| ||||||||||||||||    
T  4082576 taatgtttttaactatatatgacccgtgcggcagcacgggtggacgatctagt 4082628  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 164
Target Start/End: Complemental strand, 16349767 - 16349715
Alignment:
Q  113 taatgtcttaaactatatatgtcccgtgcggtagca-gggtggacgatctagt 164  Q
    |||||| || ||||||||||| ||||||||| |||| ||||||||||||||||    
T  16349767 taatgtttttaactatatatgacccgtgcggcagcacgggtggacgatctagt 16349715  T

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