View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10521_low_59 (Length: 206)
Name: NF10521_low_59
Description: NF10521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10521_low_59 |
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| [»] scaffold0182 (1 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 14 - 188
Target Start/End: Original strand, 6967463 - 6967637
Alignment:
| Q |
14 |
cagagagcattaattcnnnnnnngacaaatatgtatgtaagaaaactacattaaaggaatttttcgaaaaatataaagttgctttacatgataacatttt |
113 |
Q |
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| T |
6967463 |
cagagagcattaattctttttttgacaaatatgtatgtaagaaaactacattaaaggaatttgtcgaaaaatataaagttgctttacatgataacatttt |
6967562 |
T |
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| Q |
114 |
tcttgtagtgtatgtcttcaatagagttcaaaccgcttaaaaagacacacaaatgctagaaactagagatgttta |
188 |
Q |
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| T |
6967563 |
tcttgtagtgtatgtcttcaatagagttcaaaccgcttaaaaagacacacaaatgctagaaactagagatgttta |
6967637 |
T |
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Target: chr4 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 56109030 - 56109122
Alignment:
| Q |
14 |
cagagagcattaattcnnnnnnngacaaatatgtatgtaagaaaactacattaaaggaatttttcgaaaaatataaagttgctttacatgata |
106 |
Q |
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| T |
56109030 |
cagagagcattaattctttttttgacaaatatgtatgtaagaaaactacattaaaggaatttgtcgaaaaatataaagttgctttacatgata |
56109122 |
T |
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Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 26014797 - 26014889
Alignment:
| Q |
14 |
cagagagcattaattcnnnnnnngacaaatatgtatgtaagaaaactacattaaaggaatttttcgaaaaatataaagttgctttacatgata |
106 |
Q |
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| T |
26014797 |
cagagagcattaattctttttttgacaaatatgtatgtaagaaaacaacattaaaggaatttgtcgaaaaatataaagttgctttacatgata |
26014889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 29271 - 29210
Alignment:
| Q |
37 |
gacaaatatgtatgtaagaaaactacattaaaggaatttttcgaaaaatataaagttgcttt |
98 |
Q |
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| T |
29271 |
gacaaatatgtaggcaagaaaactacattgaaagaatttgttgaaaaatatgaagttgcttt |
29210 |
T |
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Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 276381 - 276320
Alignment:
| Q |
37 |
gacaaatatgtatgtaagaaaactacattaaaggaatttttcgaaaaatataaagttgcttt |
98 |
Q |
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| T |
276381 |
gacaaatatgtaggcaagaaaactacattgaaagaatttgttgaaaaatatgaagttgcttt |
276320 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 26396986 - 26396925
Alignment:
| Q |
37 |
gacaaatatgtatgtaagaaaactacattaaaggaatttttcgaaaaatataaagttgcttt |
98 |
Q |
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|||||||||||| | |||||||||||||| || |||||| | ||||||||| |||||||||| |
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| T |
26396986 |
gacaaatatgtaggcaagaaaactacattgaaagaatttgttgaaaaatatgaagttgcttt |
26396925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 19217305 - 19217249
Alignment:
| Q |
37 |
gacaaatatgtatgtaagaaaactacattaaaggaatttttcgaaaaatataaagtt |
93 |
Q |
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|||||||||||| |||||||||||||||||||||| ||| |||||||||| |||| |
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| T |
19217305 |
gacaaatatgtaggtaagaaaactacattaaaggagtttaatgaaaaatatatagtt |
19217249 |
T |
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