View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10521_low_7 (Length: 392)
Name: NF10521_low_7
Description: NF10521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10521_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 54395388 - 54395056
Alignment:
| Q |
1 |
ctaagatgtatcaaggtggtgctgatggagatgtgcctatgggagatggtatgcctggtggtggtggtg---cctctaatgggacaggctctggagctgg |
97 |
Q |
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| T |
54395388 |
ctaagatgtatcaaggtggtgctggtggagatgtgcctatgggagatggtatgcctggtggtggtggtggtgcatctaatgggacaggctctggagctgg |
54395289 |
T |
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| Q |
98 |
acctaagattgaagaggttgactaagtttttgaaacattggttgtatgtgtatgaaacttgtcttgtgtcctgttaatg-tttagttacagaaggtaggt |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
54395288 |
acctaagattgaagaggttgactaagtttttgaaacattggttgtatgtgtatgaaa----------gtcctgttaatgttttagttacagaaggtaggt |
54395199 |
T |
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| Q |
197 |
aggcttgagtgtctaaggctt--tatatgtc-ttttttagttttgtgtgatcagtgtaattgagagatgaaataaaatgaatgcaatttaatttctgtca |
293 |
Q |
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|||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
54395198 |
aggcttgagtgtctaaggttttatatatgtctttttttagttttgtgtgatcagtgtaattgagagatgaaataaaatgaatgtaatttaatttctgtca |
54395099 |
T |
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| Q |
294 |
atttatatcgcctaaatctgatactacctgctaagaggtggct |
336 |
Q |
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||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
54395098 |
atttatatcgcttaaatctgatactacctgttaagaggtggct |
54395056 |
T |
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