View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10521_low_8 (Length: 389)
Name: NF10521_low_8
Description: NF10521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10521_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 379
Target Start/End: Original strand, 8755865 - 8756223
Alignment:
| Q |
19 |
cctaagattgaagagcctgacaatttggttcctaaaataacctaattttttaaacgatcaatgaaattgaaaattctcaatcatatagtcccacatgaac |
118 |
Q |
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| T |
8755865 |
cctaagaatgaagagcttgacaatttggttcctaaaataacctaattttttaaacgatcaatgaaattgaaaattctcaatcatatagtcccacatgaac |
8755964 |
T |
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| Q |
119 |
aatttcatcactaaattgaagaacataaaaggactaataagatctagtacttttaatttttgggatcattttagactattgttaattttaatgacaaaat |
218 |
Q |
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| T |
8755965 |
aatttcatcactaaattgaagaacataaaaggactaataagatctagtacttttaatttttgggatc--tttagactattgttaattttaatgacaaaat |
8756062 |
T |
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| Q |
219 |
tgtccgacaagtgattcactacgaaaatacactattggacacttgaaaggttcataatttgatacctgaatttatcactcggcataagcatttcggaatc |
318 |
Q |
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| T |
8756063 |
tgtccgacaagtgattcactacgaaaatacactattggacacttgaaaggttcgtaatttgatacctgaatttatcactcggcataagcatttcggaatc |
8756162 |
T |
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| Q |
319 |
gttgtcacgatagtacaggccatcatttgagacatttaatgatggtaagttgtggtctctg |
379 |
Q |
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| T |
8756163 |
gttgtcacgatagtacaggccatcatttgagacatttgatgatggtaagttgtggtttctg |
8756223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 230 - 366
Target Start/End: Original strand, 8748523 - 8748659
Alignment:
| Q |
230 |
tgattcactacgaaaatacactattggacacttgaaaggttcataatttgatacctgaatttatcactcggcataagcatttcggaatcgttgtcacgat |
329 |
Q |
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| T |
8748523 |
tgattcacttcgaaaatacaccattgaacactagaaaggttcataatttgatacctgaatttatcacttggcataagcatttccgaatccttgtcacaat |
8748622 |
T |
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| Q |
330 |
agtacaggccatcatttgagacatttaatgatggtaa |
366 |
Q |
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| T |
8748623 |
agtacatgccatcattcaagacatttgatgatggtaa |
8748659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 345
Target Start/End: Original strand, 8766123 - 8766208
Alignment:
| Q |
261 |
ttgaaaggttcataa-tttgatacctgaatttatcactcggcataagcatttcggaatcgttgtcacgatagtacaggccatcatt |
345 |
Q |
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| T |
8766123 |
ttgaatggttcataaatttgatacctgaatttatcagttggcataagctttgcagaatccttgtcagaaaagtacatgccatcatt |
8766208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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