View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10521_low_9 (Length: 381)
Name: NF10521_low_9
Description: NF10521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10521_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 7 - 366
Target Start/End: Complemental strand, 2290286 - 2289927
Alignment:
| Q |
7 |
gaacgtcaatgctgaggaaattaagcaaagtaatgtggaaggtgaaactgtgatagctgagaagcctacattgatggctgaaccggcgaaacgaattatt |
106 |
Q |
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| T |
2290286 |
gaacgtcaatgctgaggaaattaagcaaagtaatgtggaagctgaaactgtgatagctgagaagcctacattgatggccgaaccggcgaaacgaattatt |
2290187 |
T |
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| Q |
107 |
gtgcatgctttgtctactgttgctgctgcaaaaccgcatttggaaaagcctcaagtggaagacacttctatgactgaaccggtgaaacaagtttctgaag |
206 |
Q |
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| T |
2290186 |
gtgcatgctttgtctactgttgctgctgcaaaaccgcatttggaaaagcctcaagtggaagacacttctatgactgaaccggtgaaacaagtttctgaag |
2290087 |
T |
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| Q |
207 |
aagctttgaatgcagttgtcgctgaaaaaccgcaattggaaaatcctcaagtggaagatacattgatggcagaaccaacagaaaaacttcttgaggaagc |
306 |
Q |
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| T |
2290086 |
aagctttgaatgcagttgtcgctgaaaaaccgcaattggaaaatcctcaagtggaagacacattgatggcagaaccaacagaaaaacttcttgaggaagc |
2289987 |
T |
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| Q |
307 |
ttcgaatgcagctgttgctgaaaagccacaattggaaaagcctcaagtggaagaaatatc |
366 |
Q |
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| T |
2289986 |
ttcggatgcagctgttgctgaaaagccacaattggaaaagcctcaagtggaagaaatatc |
2289927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 330
Target Start/End: Complemental strand, 2290066 - 2289867
Alignment:
| Q |
131 |
gctgcaaaaccgcatttggaaaagcctcaagtggaagacacttctatgactgaaccggtgaaacaagtttctgaagaagctttgaatgcagttgtcgctg |
230 |
Q |
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| T |
2290066 |
gctgaaaaaccgcaattggaaaatcctcaagtggaagacacattgatggcagaaccaacagaaaaacttcttgaggaagcttcggatgcagctgttgctg |
2289967 |
T |
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| Q |
231 |
aaaaaccgcaattggaaaatcctcaagtggaagatacattgatggcagaaccaacagaaaaacttcttgaggaagcttcgaatgcagctgttgctgaaaa |
330 |
Q |
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| T |
2289966 |
aaaagccacaattggaaaagcctcaagtggaagaaatatcaatggcggaaccggcagaacaacttcttgagaaatctttggatcctgttgttgctgaaaa |
2289867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 2289814 - 2289723
Alignment:
| Q |
146 |
ttggaaaagcctcaagtggaagacacttctatgactgaaccggtgaaacaagtttctgaagaagctttgaatgcagttgtcgctgaaaaacc |
237 |
Q |
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| T |
2289814 |
ttggaaaagcctcaagtggaagaaccatctctggcggaaccggtggaacaactttctgtggaagctttggacgctgttgttgctgaaaaacc |
2289723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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