View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10522_1 (Length: 467)
Name: NF10522_1
Description: NF10522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10522_1 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 117 - 455
Target Start/End: Complemental strand, 38706547 - 38706215
Alignment:
| Q |
117 |
gtgatttagttttgtgaaaggaagaacaaacagtatgaaatatatatgagaaacgaagaaacgtgtaagattttgattgttaattgatggtttcacttat |
216 |
Q |
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| T |
38706547 |
gtgatttagttttgtgaaaggaagaacaaacagtatgaaatatatatgagaaacgaagaaacgtgtaagattttgatt--taattgatggtttcacttat |
38706450 |
T |
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| Q |
217 |
tgggggcatgtggagttattgtgnnnnnnnnnnnnnnnnnngagtcggataagaataggtatacttcaaggtttgcactagtctacaaaatataaattaa |
316 |
Q |
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| T |
38706449 |
tgggggcatgtggagttattgtgtatatataataata----gagtcggataaggataggtatacttcaaggtttgcactagtctacaaaatataaattaa |
38706354 |
T |
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| Q |
317 |
aagggtacggaatagtgacgacttggtacacgaataatgcaccagtttgagtaaatttaattaatattactactttaggattaagatggaactaagctta |
416 |
Q |
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| T |
38706353 |
aagggtacggaatagtgacgacttggtacacgaataatgcaccagtttgagtaaatttaattaatattactactttaggattaagatggaaccaagctta |
38706254 |
T |
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| Q |
417 |
tagtttggggtttgactggttgactcttttgtttatatt |
455 |
Q |
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| T |
38706253 |
tagtttggggtttgactggttgactcttttgtttatatt |
38706215 |
T |
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