View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10522_low_1 (Length: 300)

Name: NF10522_low_1
Description: NF10522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10522_low_1
NF10522_low_1
[»] chr5 (7 HSPs)
chr5 (1-273)||(7084040-7084311)
chr5 (141-273)||(6427171-6427302)
chr5 (161-273)||(1173004-1173116)
chr5 (141-235)||(8688103-8688197)
chr5 (208-270)||(28784841-28784903)
chr5 (211-273)||(1081956-1082018)
chr5 (211-273)||(12144003-12144065)
[»] chr1 (19 HSPs)
chr1 (141-273)||(39222589-39222721)
chr1 (142-273)||(46923665-46923796)
chr1 (142-273)||(30308266-30308395)
chr1 (161-273)||(41871639-41871751)
chr1 (180-273)||(21482831-21482924)
chr1 (204-273)||(3660245-3660314)
chr1 (142-214)||(48569402-48569474)
chr1 (142-197)||(18169182-18169237)
chr1 (211-273)||(5770630-5770692)
chr1 (175-272)||(14613572-14613669)
chr1 (161-273)||(48566664-48566776)
chr1 (142-197)||(46182509-46182564)
chr1 (211-270)||(47983638-47983697)
chr1 (163-198)||(49597134-49597169)
chr1 (211-273)||(33686612-33686674)
chr1 (159-197)||(49599847-49599885)
chr1 (203-240)||(39222652-39222689)
chr1 (136-200)||(3872131-3872195)
chr1 (159-199)||(46925164-46925204)
[»] chr4 (18 HSPs)
chr4 (142-273)||(21713233-21713364)
chr4 (159-273)||(49065619-49065733)
chr4 (161-273)||(38131345-38131457)
chr4 (162-273)||(27761198-27761309)
chr4 (171-270)||(9958174-9958273)
chr4 (165-273)||(31822950-31823058)
chr4 (142-214)||(31825856-31825928)
chr4 (204-270)||(14289659-14289725)
chr4 (211-273)||(24608222-24608284)
chr4 (142-198)||(27758801-27758857)
chr4 (142-214)||(36046042-36046114)
chr4 (171-273)||(9242987-9243089)
chr4 (142-198)||(21710700-21710756)
chr4 (211-270)||(2777931-2777990)
chr4 (204-250)||(14328967-14329013)
chr4 (211-273)||(37694580-37694642)
chr4 (159-191)||(41418761-41418793)
chr4 (204-240)||(49065652-49065688)
[»] chr7 (7 HSPs)
chr7 (142-273)||(39476416-39476547)
chr7 (161-273)||(27874093-27874205)
chr7 (165-273)||(41219443-41219551)
chr7 (165-273)||(18239475-18239583)
chr7 (211-273)||(8260836-8260898)
chr7 (165-270)||(3742437-3742541)
chr7 (211-273)||(39283946-39284008)
[»] chr8 (6 HSPs)
chr8 (142-273)||(43693633-43693764)
chr8 (163-273)||(34471660-34471770)
chr8 (147-198)||(40413893-40413944)
chr8 (141-222)||(4412596-4412677)
chr8 (139-200)||(27842235-27842296)
chr8 (161-273)||(23542811-23542923)
[»] chr3 (15 HSPs)
chr3 (160-269)||(23029553-23029662)
chr3 (163-273)||(39415254-39415364)
chr3 (160-273)||(49742167-49742280)
chr3 (156-273)||(25574728-25574845)
chr3 (161-273)||(48086749-48086861)
chr3 (162-273)||(2182557-2182668)
chr3 (161-273)||(41649853-41649965)
chr3 (205-270)||(14995136-14995201)
chr3 (171-272)||(45801924-45802025)
chr3 (204-248)||(7956354-7956398)
chr3 (142-246)||(37282819-37282923)
chr3 (142-214)||(39417921-39417993)
chr3 (211-270)||(6755786-6755845)
chr3 (211-273)||(6462952-6463014)
chr3 (142-198)||(53561053-53561109)
[»] chr2 (10 HSPs)
chr2 (161-272)||(29908409-29908520)
chr2 (180-273)||(8556163-8556256)
chr2 (172-273)||(12874160-12874261)
chr2 (161-273)||(29132703-29132815)
chr2 (134-209)||(43837498-43837574)
chr2 (211-273)||(6903783-6903845)
chr2 (164-273)||(32737940-32738049)
chr2 (141-197)||(42242096-42242152)
chr2 (142-194)||(5848151-5848203)
chr2 (162-194)||(9829598-9829630)
[»] chr6 (2 HSPs)
chr6 (211-271)||(13312543-13312603)
chr6 (213-269)||(23912322-23912378)
[»] scaffold0007 (1 HSPs)
scaffold0007 (171-272)||(232408-232509)
[»] scaffold0010 (1 HSPs)
scaffold0010 (212-267)||(34743-34798)
[»] scaffold0217 (1 HSPs)
scaffold0217 (211-271)||(25555-25615)


Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 7084311 - 7084040
Alignment:
Q  1 ttttgtgtcacgtgtcacgtcataagcacggttcaatccttttggaccacacctcccacttggctgtggacacccctgttgccggcgggcgtgccacctg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  7084311 ttttgtgtcacgtgtcacgtcataagcacggttcaatccttttggaccacacctcccacttggctgtggacacccctgttgccggcggccgtgccac-tg 7084213  T
Q  101 gacccccttatacgatcaagtttaggaccacattattatatgaattctgctatttactctgcacattttgctcgcgccttgcagccatgccaaaaatgcc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| || || |||||||||||| ||    
T  7084212 gacccccttatacgatcaagtttaggaccacattattatatgaattctgctattcactctgcatattttgctcgcgccctgaagtcatgccaaaaatacc 7084113  T
Q  201 atcgcgctaattaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgacttaagtcacgca 273  Q
     | || ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7084112 cttgcactagttaagtcacgcagcgtgacttaactagcgcaccttataatctatgcgtgacttaagtcacgca 7084040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 141 - 273
Target Start/End: Original strand, 6427171 - 6427302
Alignment:
Q  141 tgaattctgctatttactctgcacattttgctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgc 240  Q
    ||||||||||| || |  ||||| |||||||||||||| |||||||||||||||| || | | |||||| |||||||  |||||||||||||||||||||    
T  6427171 tgaattctgcttttcatcctgcatattttgctcgcgccctgcagccatgccaaaa-tgtccttgcgctagttaagtcttgcagcgtgacttaactagcgc 6427269  T
Q  241 tccttataatctatgcgtgacttaagtcacgca 273  Q
     |||||||| |||||||||||||||||||||||    
T  6427270 accttataaactatgcgtgacttaagtcacgca 6427302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 161 - 273
Target Start/End: Complemental strand, 1173116 - 1173004
Alignment:
Q  161 gcacattttgctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtga 260  Q
    |||||||| ||||||||  ||||| |||  |||| ||||| | ||| || |||||||||||||||||||||||| ||||| |||||||| || |||||||    
T  1173116 gcacatttggctcgcgcactgcaggcatatcaaatatgcccttgcgttagttaagtcacgcagcgtgacttaacaagcgcaccttataacctctgcgtga 1173017  T
Q  261 cttaagtcacgca 273  Q
    ||||||| |||||    
T  1173016 cttaagttacgca 1173004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 235
Target Start/End: Original strand, 8688103 - 8688197
Alignment:
Q  141 tgaattctgctatttactctgcacattttgctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaact 235  Q
    ||||||||||| || || ||| |||||||||||||| | || ||||||| |||||||| | | |||||| |||||||| ||||||||||||||||    
T  8688103 tgaattctgctcttcaccctgtacattttgctcgcgtcctggagccatgtcaaaaatgtccttgcgctagttaagtcatgcagcgtgacttaact 8688197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 270
Target Start/End: Complemental strand, 28784903 - 28784841
Alignment:
Q  208 taattaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgacttaagtcac 270  Q
    ||||||||| |||| |||||||||||| | | | ||||||||| |||||||||||||||||||    
T  28784903 taattaagttacgctgcgtgacttaacaaacacaccttataatttatgcgtgacttaagtcac 28784841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 1082018 - 1081956
Alignment:
Q  211 ttaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgacttaagtcacgca 273  Q
    ||||||||||||||| |||||||||  ||| ||| | || || ||||||||||||||||||||    
T  1082018 ttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcgtgacttaagtcacgca 1081956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 12144003 - 12144065
Alignment:
Q  211 ttaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgacttaagtcacgca 273  Q
    ||||||||||||||| |||||||||  ||| ||| | || || ||||||||||||||||||||    
T  12144003 ttaagtcacgcagcgagacttaactcacgcacctcacaagctttgcgtgacttaagtcacgca 12144065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 141 - 273
Target Start/End: Original strand, 39222589 - 39222721
Alignment:
Q  141 tgaattctgctatttactctgcacattttgctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgc 240  Q
    |||||| |||| || || |||||||||||||||||||| ||||||||||||||||||| | | |||||| ||||||||||||||||||||||||||||||    
T  39222589 tgaattttgctcttcaccctgcacattttgctcgcgccctgcagccatgccaaaaatgtccttgcgctagttaagtcacgcagcgtgacttaactagcgc 39222688  T
Q  241 tccttataatctatgcgtgacttaagtcacgca 273  Q
     ||||||||||||||||||||||||||||||||    
T  39222689 gccttataatctatgcgtgacttaagtcacgca 39222721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 142 - 273
Target Start/End: Original strand, 46923665 - 46923796
Alignment:
Q  142 gaattctgctatttactctgcacattttgctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgct 241  Q
    |||||||||| || || |||||||||||||||||||| ||||||||||||||||||||| | |||||| ||| |||||||| |||||||||||||||||     
T  46923665 gaattctgctcttcaccctgcacattttgctcgcgccctgcagccatgccaaaaatgcccttgcgctagttacgtcacgcaacgtgacttaactagcgca 46923764  T
Q  242 ccttataatctatgcgtgacttaagtcacgca 273  Q
    ||||||||||||||||||||||||||||||||    
T  46923765 ccttataatctatgcgtgacttaagtcacgca 46923796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 142 - 273
Target Start/End: Original strand, 30308266 - 30308395
Alignment:
Q  142 gaattctgctatttactctgcacattttgctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgct 241  Q
    |||||| ||| || || |||||||||||||||||||| |||||||||||||||||||   | ||| || |||||||||||||||||||||||| || ||     
T  30308266 gaattcagctcttcaccctgcacattttgctcgcgccctgcagccatgccaaaaatgtttttgcgttagttaagtcacgcagcgtgacttaaccagtgca 30308365  T
Q  242 ccttataatctatgcgtgacttaagtcacgca 273  Q
    ||||||||  |||  |||||||||||||||||    
T  30308366 ccttataacttat--gtgacttaagtcacgca 30308395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 161 - 273
Target Start/End: Original strand, 41871639 - 41871751
Alignment:
Q  161 gcacattttgctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtga 260  Q
    |||||||||||||||||| | ||||||||||||||||||| | |||| | ||||||||||| || |||||||||| |||| |||||||| || || ||||    
T  41871639 gcacattttgctcgcgccctacagccatgccaaaaatgcccttgcgcaagttaagtcacgctgcatgacttaacttgcgcaccttataacctctgtgtga 41871738  T
Q  261 cttaagtcacgca 273  Q
    ||||||| |||||    
T  41871739 cttaagtaacgca 41871751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 180 - 273
Target Start/End: Original strand, 21482831 - 21482924
Alignment:
Q  180 tgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgacttaagtcacgca 273  Q
    ||||||||| || || ||||| | ||| ||||||||||||||||||||||||||||| | | |||||||| || ||||||||||||||||||||    
T  21482831 tgcagccattcctaatatgcctttgcgttaattaagtcacgcagcgtgacttaactaacacaccttataagctctgcgtgacttaagtcacgca 21482924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 3660314 - 3660245
Alignment:
Q  204 gcgctaattaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgacttaagtcacgca 273  Q
    |||||| ||||||| | |||||||||||||||||||| |||||||| || ||||||||||||||||||||    
T  3660314 gcgctagttaagtcgcacagcgtgacttaactagcgcaccttataagctctgcgtgacttaagtcacgca 3660245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 48569474 - 48569402
Alignment:
Q  142 gaattctgctatttactctgcacattttgctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaa 214  Q
    |||||||||| || || |||||||||||||||||||| ||| ||||||||||||||||| | |||||| ||||    
T  48569474 gaattctgctcttcaccctgcacattttgctcgcgccctgctgccatgccaaaaatgcccttgcgctagttaa 48569402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 197
Target Start/End: Original strand, 18169182 - 18169237
Alignment:
Q  142 gaattctgctatttactctgcacattttgctcgcgccttgcagccatgccaaaaat 197  Q
    |||||||||| || || ||||||||||||||||| || ||||||||||||||||||    
T  18169182 gaattctgctcttcaccctgcacattttgctcgcaccctgcagccatgccaaaaat 18169237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 5770692 - 5770630
Alignment:
Q  211 ttaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgacttaagtcacgca 273  Q
    ||||||||||| |||||||||||||  ||| |||||||| || |||||| |||||||||||||    
T  5770692 ttaagtcacgctgcgtgacttaactcacgcaccttataagctttgcgtggcttaagtcacgca 5770630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 272
Target Start/End: Original strand, 14613572 - 14613669
Alignment:
Q  175 cgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgacttaagtcacgc 272  Q
    |||| |||||||||||| ||| | || | ||| || |||| ||||||| ||||||||||||| ||| | || || | |||||||||||||||||||||    
T  14613572 cgccctgcagccatgcctaaattacctttgcgttagttaaatcacgcaacgtgacttaactaacgcacgttgtattttatgcgtgacttaagtcacgc 14613669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 273
Target Start/End: Original strand, 48566664 - 48566776
Alignment:
Q  161 gcacattttgctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtga 260  Q
    |||||||||||||| |   ||||||||||| |||||||   | |||  | ||||||||||  ||||||||||||| ||   |||||||| || |||||||    
T  48566664 gcacattttgctcgtgttatgcagccatgctaaaaatgttcttgcgtaagttaagtcacgttgcgtgacttaacttgcagaccttataacctttgcgtga 48566763  T
Q  261 cttaagtcacgca 273  Q
    |||||||||||||    
T  48566764 cttaagtcacgca 48566776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 197
Target Start/End: Complemental strand, 46182564 - 46182509
Alignment:
Q  142 gaattctgctatttactctgcacattttgctcgcgccttgcagccatgccaaaaat 197  Q
    |||||||||| || |||||| | | |||||||||||||||||||||||| ||||||    
T  46182564 gaattctgctcttcactctgtataatttgctcgcgccttgcagccatgctaaaaat 46182509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 270
Target Start/End: Original strand, 47983638 - 47983697
Alignment:
Q  211 ttaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgacttaagtcac 270  Q
    |||||||||||||||||||||||||| ||| |||||||   | ||||||| |||||||||    
T  47983638 ttaagtcacgcagcgtgacttaactaacgcaccttatatgttctgcgtgagttaagtcac 47983697  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 198
Target Start/End: Original strand, 49597134 - 49597169
Alignment:
Q  163 acattttgctcgcgccttgcagccatgccaaaaatg 198  Q
    |||||||||||||||| |||||||||||||||||||    
T  49597134 acattttgctcgcgccctgcagccatgccaaaaatg 49597169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 33686674 - 33686612
Alignment:
Q  211 ttaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgacttaagtcacgca 273  Q
    ||||||||||||||| |||||||||  ||| ||| | || || ||||||||||||||||||||    
T  33686674 ttaagtcacgcagcgagacttaactcacgcacctcacaagctttgcgtgacttaagtcacgca 33686612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 197
Target Start/End: Complemental strand, 49599885 - 49599847
Alignment:
Q  159 ctgcacattttgctcgcgccttgcagccatgccaaaaat 197  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  49599885 ctgcacattttgctcgcgccctacagccatgccaaaaat 49599847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 39222689 - 39222652
Alignment:
Q  203 cgcgctaattaagtcacgcagcgtgacttaactagcgc 240  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  39222689 cgcgctagttaagtcacgctgcgtgacttaactagcgc 39222652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 3872131 - 3872195
Alignment:
Q  136 ttatatgaattctgctatttactctgcacattttgctcgcgccttgcagccatgccaaaaatgcc 200  Q
    |||||||||||||||| ||  | |||||| ||| ||||||||| ||||| | |||||||||||||    
T  3872131 ttatatgaattctgctcttccccctgcacttttcgctcgcgccctgcagtcttgccaaaaatgcc 3872195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 46925204 - 46925164
Alignment:
Q  159 ctgcacattttgctcgcgccttgcagccatgccaaaaatgc 199  Q
    ||||||||||||| |||||  ||||||||||||||||||||    
T  46925204 ctgcacattttgcccgcgctatgcagccatgccaaaaatgc 46925164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 142 - 273
Target Start/End: Complemental strand, 21713364 - 21713233
Alignment:
Q  142 gaattctgctatttactctgcacattttgctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgct 241  Q
    |||||||||| || || |||||||||||||||||||| ||||||||||||||||||||| | |||||| |||||||||||||||||| |||||||||||     
T  21713364 gaattctgctcttcaccctgcacattttgctcgcgccctgcagccatgccaaaaatgcccttgcgctagttaagtcacgcagcgtgatttaactagcgca 21713265  T
Q  242 ccttataatctatgcgtgacttaagtcacgca 273  Q
    |||||||||||||||||| |||||||||||||    
T  21713264 ccttataatctatgcgtggcttaagtcacgca 21713233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 159 - 273
Target Start/End: Complemental strand, 49065733 - 49065619
Alignment:
Q  159 ctgcacattttgctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgctccttataatctatgcgt 258  Q
    |||||||||||||||||||| ||||||||||||||||||||| | |||||| ||||||||||  |||||||||||||||||| |||||||| ||||||||    
T  49065733 ctgcacattttgctcgcgccctgcagccatgccaaaaatgcccttgcgctagttaagtcacgttgcgtgacttaactagcgcaccttataaactatgcgt 49065634  T
Q  259 gacttaagtcacgca 273  Q
    |||||||||||||||    
T  49065633 gacttaagtcacgca 49065619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 161 - 273
Target Start/End: Original strand, 38131345 - 38131457
Alignment:
Q  161 gcacattttgctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtga 260  Q
    |||||||||||||||||| ||||||||||||||||||||| | |||| | ||||||||||| || |||||||||| |||| |||| ||| || || ||||    
T  38131345 gcacattttgctcgcgccctgcagccatgccaaaaatgcccttgcgcaagttaagtcacgctgcatgacttaacttgcgcaccttctaacctctgtgtga 38131444  T
Q  261 cttaagtcacgca 273  Q
    |||||||||||||    
T  38131445 cttaagtcacgca 38131457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 162 - 273
Target Start/End: Complemental strand, 27761309 - 27761198
Alignment:
Q  162 cacattttgctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgac 261  Q
    |||||||| |||||||  |||||||||| |||||||||| | |||| | ||||||||||| |||||| |||| | |||| ||||||||||| ||||||||    
T  27761309 cacattttactcgcgctatgcagccatgtcaaaaatgcccttgcgcaagttaagtcacgctgcgtgatttaatttgcgcaccttataatctctgcgtgac 27761210  T
Q  262 ttaagtcacgca 273  Q
    ||||||||||||    
T  27761209 ttaagtcacgca 27761198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 270
Target Start/End: Complemental strand, 9958273 - 9958174
Alignment:
Q  171 ctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgacttaagtcac 270  Q
    |||||||| |||||||||||| ||| | |||| ||| || |||||||||||||||||||||||||| ||| | || || | |||||||||||||||||||    
T  9958273 ctcgcgccctgcagccatgcctaaattaccattgcgttagttaagtcacgcagcgtgacttaactaacgcacgttgtattttatgcgtgacttaagtcac 9958174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 273
Target Start/End: Original strand, 31822950 - 31823058
Alignment:
Q  165 attttgctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgactta 264  Q
    ||||| |||||| | ||||||||||||||||||||| | |||| | ||||| ||||| | ||||||||||| |||| |||||||| || ||||||| |||    
T  31822950 attttactcgcgtcctgcagccatgccaaaaatgcccttgcgcaagttaagccacgctgtgtgacttaacttgcgcaccttataagctttgcgtgagtta 31823049  T
Q  265 agtcacgca 273  Q
    | |||||||    
T  31823050 actcacgca 31823058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 31825928 - 31825856
Alignment:
Q  142 gaattctgctatttactctgcacattttgctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaa 214  Q
    |||||||||| || || |||||||||||||||||||| ||||||||||||||||||||| | |||||| ||||    
T  31825928 gaattctgctcttcaccctgcacattttgctcgcgccctgcagccatgccaaaaatgcccttgcgctagttaa 31825856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 270
Target Start/End: Original strand, 14289659 - 14289725
Alignment:
Q  204 gcgctaattaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgacttaagtcac 270  Q
    |||||| ||||||||| ||| |||||||||||||||| ||||||||| |||| ||||||||||||||    
T  14289659 gcgctagttaagtcacacagtgtgacttaactagcgcaccttataatatatgtgtgacttaagtcac 14289725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 24608284 - 24608222
Alignment:
Q  211 ttaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgacttaagtcacgca 273  Q
    |||||| |||||||| |||||||||||||| ||||||||||| || |||| ||||||||||||    
T  24608284 ttaagttacgcagcgagacttaactagcgcaccttataatctttgtgtgagttaagtcacgca 24608222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 27758801 - 27758857
Alignment:
Q  142 gaattctgctatttactctgcacattttgctcgcgccttgcagccatgccaaaaatg 198  Q
    ||||||||||||| ||  || |||||||||||||||| |||||||||||||||||||    
T  27758801 gaattctgctattcaccttgtacattttgctcgcgccctgcagccatgccaaaaatg 27758857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 36046042 - 36046114
Alignment:
Q  142 gaattctgctatttactctgcacattttgctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaa 214  Q
    ||||| |||| || |||| |||||||| |||||| ||||||||||||||| ||||||||| ||||||| ||||    
T  36046042 gaattatgctcttcactcagcacatttcgctcgcaccttgcagccatgcccaaaatgccaccgcgctagttaa 36046114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 273
Target Start/End: Complemental strand, 9243089 - 9242987
Alignment:
Q  171 ctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgacttaagtcac 270  Q
    |||||||| |||| ||||||| ||||||||   |||  | ||||||||| |  ||||||||||||  | | ||||||||||| |||||||||||||||||    
T  9243089 ctcgcgccctgcaaccatgcctaaaatgcccgtgcgtgagttaagtcacactacgtgacttaactcacacaccttataatctctgcgtgacttaagtcac 9242990  T
Q  271 gca 273  Q
    |||    
T  9242989 gca 9242987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 21710700 - 21710756
Alignment:
Q  142 gaattctgctatttactctgcacattttgctcgcgccttgcagccatgccaaaaatg 198  Q
    |||| ||||| || || |||||||||||||||| ||| |||||||||||||||||||    
T  21710700 gaatactgctcttcaccctgcacattttgctcgtgccctgcagccatgccaaaaatg 21710756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 270
Target Start/End: Original strand, 2777931 - 2777990
Alignment:
Q  211 ttaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgacttaagtcac 270  Q
    |||||||||||||||||||||||||  ||| ||||||||  | ||||| |||||||||||    
T  2777931 ttaagtcacgcagcgtgacttaactcacgcaccttataagttctgcgtaacttaagtcac 2777990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 250
Target Start/End: Original strand, 14328967 - 14329013
Alignment:
Q  204 gcgctaattaagtcacgcagcgtgacttaactagcgctccttataat 250  Q
    |||||| ||||||||| ||| |||||||||||||||| |||||||||    
T  14328967 gcgctagttaagtcacacagtgtgacttaactagcgcaccttataat 14329013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 37694642 - 37694580
Alignment:
Q  211 ttaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgacttaagtcacgca 273  Q
    |||||||||||||||||||||||||  ||| ||| | || || ||| ||||||||||||||||    
T  37694642 ttaagtcacgcagcgtgacttaactcacgcacctcacaagctctgcatgacttaagtcacgca 37694580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 191
Target Start/End: Original strand, 41418761 - 41418793
Alignment:
Q  159 ctgcacattttgctcgcgccttgcagccatgcc 191  Q
    |||||||||||||||||||| ||||||||||||    
T  41418761 ctgcacattttgctcgcgccatgcagccatgcc 41418793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 49065652 - 49065688
Alignment:
Q  204 gcgctaattaagtcacgcagcgtgacttaactagcgc 240  Q
    |||||| |||||||||||| |||||||||||||||||    
T  49065652 gcgctagttaagtcacgcaacgtgacttaactagcgc 49065688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 142 - 273
Target Start/End: Original strand, 39476416 - 39476547
Alignment:
Q  142 gaattctgctatttactctgcacattttgctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgct 241  Q
    |||||||||| || || |||||||||||||||||||||||||||||||  ||||||||| |  || || |||||||| |||||||||||||||||||||     
T  39476416 gaattctgctcttcaccctgcacattttgctcgcgccttgcagccatgttaaaaatgcccttacgttagttaagtcatgcagcgtgacttaactagcgca 39476515  T
Q  242 ccttataatctatgcgtgacttaagtcacgca 273  Q
    ||||||||||||||||||||||||||||||||    
T  39476516 ccttataatctatgcgtgacttaagtcacgca 39476547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 161 - 273
Target Start/End: Complemental strand, 27874205 - 27874093
Alignment:
Q  161 gcacattttgctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtga 260  Q
    |||||||||||||||| | ||||||||||||||||||| | | |||| | ||||||||||| ||||| ||||||| |||| || ||||| || |||||||    
T  27874205 gcacattttgctcgcgtcctgcagccatgccaaaaatgtccttgcgcaagttaagtcacgctgcgtggcttaacttgcgcaccatataacctctgcgtga 27874106  T
Q  261 cttaagtcacgca 273  Q
    |||||| ||||||    
T  27874105 cttaagccacgca 27874093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 273
Target Start/End: Complemental strand, 41219551 - 41219443
Alignment:
Q  165 attttgctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgactta 264  Q
    |||||||||||| | |||||||||| |||||||| ||| |||| | |||||| || | |||||| |||||| ||||  ||||||| || |||||||||||    
T  41219551 attttgctcgcgtcgtgcagccatgtcaaaaatgtcattgcgcaagttaagttacactgcgtgatttaacttgcgcatcttataacctctgcgtgactta 41219452  T
Q  265 agtcacgca 273  Q
    |||||||||    
T  41219451 agtcacgca 41219443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 273
Target Start/End: Complemental strand, 18239583 - 18239475
Alignment:
Q  165 attttgctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgactta 264  Q
    |||||||||| ||| ||||||||||| ||||||||| | || | | ||||||||||| ||||||||||||| |  | ||||||||  | || ||||||||    
T  18239583 attttgctcgagccctgcagccatgctaaaaatgcccttgcacaagttaagtcacgctgcgtgacttaacttgtacaccttataacatctgtgtgactta 18239484  T
Q  265 agtcacgca 273  Q
    |||||||||    
T  18239483 agtcacgca 18239475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 8260836 - 8260898
Alignment:
Q  211 ttaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgacttaagtcacgca 273  Q
    ||||||||||| |||||||||||||   || ||||||||||| ||||||||||||||||||||    
T  8260836 ttaagtcacgctgcgtgacttaactcatgcaccttataatctctgcgtgacttaagtcacgca 8260898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 270
Target Start/End: Complemental strand, 3742541 - 3742437
Alignment:
Q  165 attttgctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgactta 264  Q
    ||||| |||||||| ||||||| || |||||||| | | |||  | |||||||| ||||||||| ||||||||||| | ||||||||| || ||||||||    
T  3742541 attttactcgcgccctgcagccgtgtcaaaaatgtcct-gcgtcagttaagtcatgcagcgtgatttaactagcgcactttataatctctgtgtgactta 3742443  T
Q  265 agtcac 270  Q
    ||||||    
T  3742442 agtcac 3742437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 39283946 - 39284008
Alignment:
Q  211 ttaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgacttaagtcacgca 273  Q
    ||||||||||||||||| |||||||  ||| ||| |||| || ||||||||||||||||||||    
T  39283946 ttaagtcacgcagcgtggcttaactcacgcacctcataagctctgcgtgacttaagtcacgca 39284008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 142 - 273
Target Start/End: Complemental strand, 43693764 - 43693633
Alignment:
Q  142 gaattctgctatttactctgcacattttgctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgct 241  Q
    ||||| |||| || || |||||||||||||||||||| ||||||||||||||||||| | | |||||| ||| ||||||||||||||||||||||||||     
T  43693764 gaattttgctcttcaccctgcacattttgctcgcgccctgcagccatgccaaaaatgtccttgcgctagttaggtcacgcagcgtgacttaactagcgca 43693665  T
Q  242 ccttataatctatgcgtgacttaagtcacgca 273  Q
    |||||||||||||| ||||||||| |||||||    
T  43693664 ccttataatctatgtgtgacttaattcacgca 43693633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 163 - 273
Target Start/End: Complemental strand, 34471770 - 34471660
Alignment:
Q  163 acattttgctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgact 262  Q
    |||||||||||||||| |||||||||| |||||||| | | |||| | ||||||||||| ||||||||||||| |||| |||||||| ||||||||||||    
T  34471770 acattttgctcgcgccctgcagccatgtcaaaaatgtctttgcgcaagttaagtcacgctgcgtgacttaacttgcgcaccttataaactatgcgtgact 34471671  T
Q  263 taagtcacgca 273  Q
    |||||||||||    
T  34471670 taagtcacgca 34471660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 198
Target Start/End: Original strand, 40413893 - 40413944
Alignment:
Q  147 ctgctatttactctgcacattttgctcgcgccttgcagccatgccaaaaatg 198  Q
    |||||||| || ||||||||||| ||||||||||||||||||||||||||||    
T  40413893 ctgctattcaccctgcacattttactcgcgccttgcagccatgccaaaaatg 40413944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 222
Target Start/End: Original strand, 4412596 - 4412677
Alignment:
Q  141 tgaattctgctatttactctgcacattttgctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgca 222  Q
    ||||||||||| ||||| | |||||||||||||||||| ||||||| | |||||  | || | ||||||||||| |||||||    
T  4412596 tgaattctgctctttacccagcacattttgctcgcgccctgcagccgttccaaatttacctttgcgctaattaactcacgca 4412677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 27842235 - 27842296
Alignment:
Q  139 tatgaattctgctatttactctgcacattttgctcgcgccttgcagccatgccaaaaatgcc 200  Q
    |||||||||| || ||||| |||||||||||||||| ||| |||||||||  ||||||||||    
T  27842235 tatgaattctactctttaccctgcacattttgctcgtgccctgcagccatatcaaaaatgcc 27842296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 273
Target Start/End: Complemental strand, 23542923 - 23542811
Alignment:
Q  161 gcacattttgctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtga 260  Q
    |||||||| ||||||||| ||||||||| || || || || ||||| ||  |||||||| | ||||||||||| || | | || ||||| || |||||||    
T  23542923 gcacatttcgctcgcgccctgcagccattcctaatataccctcgcgttaggtaagtcacactgcgtgacttaaataacacaccgtataagctctgcgtga 23542824  T
Q  261 cttaagtcacgca 273  Q
    ||||| |||||||    
T  23542823 cttaattcacgca 23542811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 160 - 269
Target Start/End: Original strand, 23029553 - 23029662
Alignment:
Q  160 tgcacattttgctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtg 259  Q
    ||||||||||||||||||| ||||||||||||||||||||| | |||||| |||||||||||||||||||||||||  |||  || |||| || ||||||    
T  23029553 tgcacattttgctcgcgccctgcagccatgccaaaaatgcccttgcgctagttaagtcacgcagcgtgacttaactcacgcatctcataagctttgcgtg 23029652  T
Q  260 acttaagtca 269  Q
    ||||||||||    
T  23029653 acttaagtca 23029662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 163 - 273
Target Start/End: Original strand, 39415254 - 39415364
Alignment:
Q  163 acattttgctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgact 262  Q
    |||||||||||||| | |||| |||||||||||||| | | || | ||||||||||||| ||||||||||||| |||| |||||||| || |||||||||    
T  39415254 acattttgctcgcgtcctgcaaccatgccaaaaatggccttgcacaaattaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcgtgact 39415353  T
Q  263 taagtcacgca 273  Q
    |||||||||||    
T  39415354 taagtcacgca 39415364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 160 - 273
Target Start/End: Complemental strand, 49742280 - 49742167
Alignment:
Q  160 tgcacattttgctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtg 259  Q
    |||||||||| ||||| || ||||||||||||||||||| | | |||||| |||||||||||||||||||||||||  ||| ||| | || || ||||||    
T  49742280 tgcacattttactcgcaccctgcagccatgccaaaaatgtccttgcgctagttaagtcacgcagcgtgacttaactcacgcacctcacaagctctgcgtg 49742181  T
Q  260 acttaagtcacgca 273  Q
    ||||||||||||||    
T  49742180 acttaagtcacgca 49742167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 156 - 273
Target Start/End: Original strand, 25574728 - 25574845
Alignment:
Q  156 actctgcacattttgctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgctccttataatctatg 255  Q
    |||| |||||||||| ||||||| |||||||||| |||||||||| | |||| | |||||||| || ||||||||||||| | || |||| ||| || ||    
T  25574728 actcagcacattttggtcgcgccctgcagccatgtcaaaaatgcccttgcgcaagttaagtcatgccgcgtgacttaacttgtgcaccttgtaacctctg 25574827  T
Q  256 cgtgacttaagtcacgca 273  Q
     |||||||||||||||||    
T  25574828 tgtgacttaagtcacgca 25574845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 161 - 273
Target Start/End: Original strand, 48086749 - 48086861
Alignment:
Q  161 gcacattttgctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtga 260  Q
    |||||||||| | ||||| |||||||||| ||||||| || | |||| | ||||||||| | ||||||||||||| |||| |||||||| || ||| |||    
T  48086749 gcacattttgattgcgccctgcagccatgtcaaaaatacccttgcgcaagttaagtcacactgcgtgacttaacttgcgcaccttataacctctgcatga 48086848  T
Q  261 cttaagtcacgca 273  Q
    |||||||||||||    
T  48086849 cttaagtcacgca 48086861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 273
Target Start/End: Complemental strand, 2182668 - 2182557
Alignment:
Q  162 cacattttgctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgac 261  Q
    |||||||||||||| || ||||||||||  ||||||||| | |||  | ||||||||||| ||||||||||||| |||| |||||||| || ||| |||     
T  2182668 cacattttgctcgcaccatgcagccatgttaaaaatgcccttgcgtaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcttgat 2182569  T
Q  262 ttaagtcacgca 273  Q
    ||||||||||||    
T  2182568 ttaagtcacgca 2182557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 273
Target Start/End: Original strand, 41649853 - 41649965
Alignment:
Q  161 gcacattttgctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtga 260  Q
    |||||||||||||||||| |||||||||| |||||||||  | |||  ||||||||||||||||| || ||||||  | | ||| | || || || ||||    
T  41649853 gcacattttgctcgcgccctgcagccatgtcaaaaatgctcttgcgtaaattaagtcacgcagcgagatttaactcacacacctcacaagctctgtgtga 41649952  T
Q  261 cttaagtcacgca 273  Q
    |||||||||||||    
T  41649953 cttaagtcacgca 41649965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 270
Target Start/End: Original strand, 14995136 - 14995201
Alignment:
Q  205 cgctaattaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgacttaagtcac 270  Q
    ||||| |||||||||||||||||||||||||| | | ||||||||||| || |||| |||||||||    
T  14995136 cgctagttaagtcacgcagcgtgacttaactaacacaccttataatctttgtgtgagttaagtcac 14995201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 272
Target Start/End: Complemental strand, 45802025 - 45801924
Alignment:
Q  171 ctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgacttaagtcac 270  Q
    |||||| | |||||||||||| ||| | || | ||| || |||||||||||| | ||||||||||| ||| | || || | |||||||||||||||||||    
T  45802025 ctcgcgtcctgcagccatgcctaaattacccttgcgttagttaagtcacgcaacatgacttaactaacgcacgttgtattttatgcgtgacttaagtcac 45801926  T
Q  271 gc 272  Q
    ||    
T  45801925 gc 45801924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 7956398 - 7956354
Alignment:
Q  204 gcgctaattaagtcacgcagcgtgacttaactagcgctccttata 248  Q
    |||||| |||||||||||||| ||||||||||||||| |||||||    
T  7956398 gcgctagttaagtcacgcagcatgacttaactagcgcaccttata 7956354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 246
Target Start/End: Complemental strand, 37282923 - 37282819
Alignment:
Q  142 gaattctgctatttactctgcacattttgctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgct 241  Q
    |||||||||| || || | |||||| |  |||||||| ||||  ||| ||||| ||||| | |||||| ||||||||||||| ||||||||| ||||||     
T  37282923 gaattctgctcttcacccagcacatatcactcgcgccctgcaagcattccaaatatgcccttgcgctagttaagtcacgcagtgtgacttaagtagcgca 37282824  T
Q  242 cctta 246  Q
    |||||    
T  37282823 cctta 37282819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 39417993 - 39417921
Alignment:
Q  142 gaattctgctatttactctgcacattttgctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaa 214  Q
    |||||||||| || || || ||||||||||||||||| | |||||||||||||||| || | |||||| ||||    
T  39417993 gaattctgctcttcaccctccacattttgctcgcgccctccagccatgccaaaaatacccttgcgctagttaa 39417921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 6755845 - 6755786
Alignment:
Q  211 ttaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgacttaagtcac 270  Q
    ||||||||||| |||||||||||||  ||| |||||||| || || ||||||||||||||    
T  6755845 ttaagtcacgctgcgtgacttaactcacgcaccttataagctttgtgtgacttaagtcac 6755786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 6462952 - 6463014
Alignment:
Q  211 ttaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgacttaagtcacgca 273  Q
    ||||||||||  |||||||||||||  ||| |||||||| || || |||||||||||||||||    
T  6462952 ttaagtcacgttgcgtgacttaactcacgcaccttataagctttgtgtgacttaagtcacgca 6463014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 53561053 - 53561109
Alignment:
Q  142 gaattctgctatttactctgcacattttgctcgcgccttgcagccatgccaaaaatg 198  Q
    |||||||||| || ||||| |||||||||||||| || | |||||||| ||||||||    
T  53561053 gaattctgctcttcactctacacattttgctcgccccatacagccatggcaaaaatg 53561109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 161 - 272
Target Start/End: Original strand, 29908409 - 29908520
Alignment:
Q  161 gcacattttgctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtga 260  Q
    |||||||||||||||||| |||||| |||||||||||||| | |||| | |||||| |||| ||||||||||||| |||| |||||||| || |||||||    
T  29908409 gcacattttgctcgcgccctgcagctatgccaaaaatgcccttgcgcaagttaagttacgctgcgtgacttaacttgcgcaccttataacctctgcgtga 29908508  T
Q  261 cttaagtcacgc 272  Q
    ||||||||||||    
T  29908509 cttaagtcacgc 29908520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 180 - 273
Target Start/End: Original strand, 8556163 - 8556256
Alignment:
Q  180 tgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgacttaagtcacgca 273  Q
    ||||||||||||||||||||  | |||||| |||||||||||| |||||||||||| |||| |||||||||||||| |||||||||||||||||    
T  8556163 tgcagccatgccaaaaatgctcttgcgctagttaagtcacgcaacgtgacttaactggcgcaccttataatctatgtgtgacttaagtcacgca 8556256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 172 - 273
Target Start/End: Original strand, 12874160 - 12874261
Alignment:
Q  172 tcgcgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgacttaagtcacg 271  Q
    ||||||| |||| |||| ||||| ||||  | ||| || |||||||| ||| ||||||||||| ||||| ||||||||||| | ||||||||||||||||    
T  12874160 tcgcgccctgcaaccataccaaatatgctcttgcgttagttaagtcatgcaacgtgacttaaccagcgcgccttataatctctacgtgacttaagtcacg 12874259  T
Q  272 ca 273  Q
    ||    
T  12874260 ca 12874261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 273
Target Start/End: Complemental strand, 29132815 - 29132703
Alignment:
Q  161 gcacattttgctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtga 260  Q
    |||||||| ||||||| | ||||||||| || || |||||   ||| || |||||||||||| ||||||||||||| ||| ||||||||  | | |||||    
T  29132815 gcacatttcgctcgcgtcctgcagccattcctaatatgcccctgcgttagttaagtcacgcaacgtgacttaactaacgcaccttataagttctacgtga 29132716  T
Q  261 cttaagtcacgca 273  Q
    |||||||||||||    
T  29132715 cttaagtcacgca 29132703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 209
Target Start/End: Original strand, 43837498 - 43837574
Alignment:
Q  134 tattatat-gaattctgctatttactctgcacattttgctcgcgccttgcagccatgccaaaaatgccatcgcgcta 209  Q
    |||||||| |||| ||||| || || |||||||||||||||||||| ||||||||||||||||||||| | ||||||    
T  43837498 tattatatcgaatactgctcttcaccctgcacattttgctcgcgccctgcagccatgccaaaaatgcccttgcgcta 43837574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 6903845 - 6903783
Alignment:
Q  211 ttaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgacttaagtcacgca 273  Q
    ||||||||||| |||||||||||||   || || ||||||||||||||| |||||||||||||    
T  6903845 ttaagtcacgctgcgtgacttaactcatgcaccatataatctatgcgtggcttaagtcacgca 6903783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 273
Target Start/End: Complemental strand, 32738049 - 32737940
Alignment:
Q  164 cattttgctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgactt 263  Q
    ||||| ||||||||| ||||  | | ||||| ||||| | ||| || ||||||||| |||||||||||||  | ||| ||||||||  | ||||||||||    
T  32738049 catttcgctcgcgccctgcaagccttccaaatatgcccttgcgttagttaagtcacacagcgtgacttaataaacgcaccttataagttgtgcgtgactt 32737950  T
Q  264 aagtcacgca 273  Q
    ||||||||||    
T  32737949 aagtcacgca 32737940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 42242152 - 42242096
Alignment:
Q  141 tgaattctgctatttactctgcacattttgctcgcgccttgcagccatgccaaaaat 197  Q
    ||||| ||||| || || |||||||||||||||||||| ||||||| ||||||||||    
T  42242152 tgaatactgctcttcaccctgcacattttgctcgcgccctgcagccgtgccaaaaat 42242096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 5848203 - 5848151
Alignment:
Q  142 gaattctgctatttactctgcacattttgctcgcgccttgcagccatgccaaa 194  Q
    ||||||||||||  || ||||||||||||||||||||  |||||||| |||||    
T  5848203 gaattctgctatccaccctgcacattttgctcgcgcccagcagccattccaaa 5848151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 9829630 - 9829598
Alignment:
Q  162 cacattttgctcgcgccttgcagccatgccaaa 194  Q
    ||||||||||||||||| |||||||||||||||    
T  9829630 cacattttgctcgcgccctgcagccatgccaaa 9829598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 271
Target Start/End: Original strand, 13312543 - 13312603
Alignment:
Q  211 ttaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgacttaagtcacg 271  Q
    ||||||||||| |||||||||||||| ||| |||||||| || ||||||||||||||||||    
T  13312543 ttaagtcacgctgcgtgacttaactaacgcaccttataagctctgcgtgacttaagtcacg 13312603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 269
Target Start/End: Complemental strand, 23912378 - 23912322
Alignment:
Q  213 aagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgacttaagtca 269  Q
    ||||||||| | |||||||||||  ||| |||||||| || ||||||||||||||||    
T  23912378 aagtcacgccgtgtgacttaactcacgcaccttataagctctgcgtgacttaagtca 23912322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 272
Target Start/End: Complemental strand, 232509 - 232408
Alignment:
Q  171 ctcgcgccttgcagccatgccaaaaatgccatcgcgctaattaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgacttaagtcac 270  Q
    |||||||| |||||||||||| ||| | |  | ||| || |||||||||||||||||||||||||| | | | || || | |||||||||||||||||||    
T  232509 ctcgcgccctgcagccatgcctaaattactcttgcgttagttaagtcacgcagcgtgacttaactaacacacgttgtattttatgcgtgacttaagtcac 232410  T
Q  271 gc 272  Q
    ||    
T  232409 gc 232408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 267
Target Start/End: Complemental strand, 34798 - 34743
Alignment:
Q  212 taagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgacttaagt 267  Q
    ||||||||||||||||||||||||| ||| | || |||| ||||||||||||||||    
T  34798 taagtcacgcagcgtgacttaactaacgcacgttgtaatttatgcgtgacttaagt 34743  T

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Target: scaffold0217 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 271
Target Start/End: Original strand, 25555 - 25615
Alignment:
Q  211 ttaagtcacgcagcgtgacttaactagcgctccttataatctatgcgtgacttaagtcacg 271  Q
    ||||||||||| |||||| |||| |  | | ||||||||||||||||||||||||| ||||    
T  25555 ttaagtcacgctgcgtgatttaattcacacaccttataatctatgcgtgacttaaggcacg 25615  T

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