View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10522_low_2 (Length: 256)
Name: NF10522_low_2
Description: NF10522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10522_low_2 |
 | |
|
| [»] scaffold0060 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 35020781 - 35020549
Alignment:
| Q |
19 |
atagaagccttgtttttcttcttctttttggatggttgctaaatttatattagtgggatatatttcattgttttgatgtttggtctttttcttttgttgg |
118 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||| || |
|
|
| T |
35020781 |
atagaagcattgtttttcttcttctttttggatgattgctaaatttatattagtggaatatatttcattgttttaatgtttggtctttttcttctgtagg |
35020682 |
T |
|
| Q |
119 |
gttagatttgttgctagacttggctgcatttctttgtttagccgtttaggtttatttgattaagagaaatattaacgaatgccttgaattaaaagcaaag |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||| |||| |
|
|
| T |
35020681 |
gttagatttgttgctagacttggctgcatttttttgtttagccgtttagatttatttgattaagagaaatattaacgagtatcttgaattaaaaacaaaa |
35020582 |
T |
|
| Q |
219 |
tttaagctagatgtttcaagtgtctctgcttct |
251 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
35020581 |
tttaagctagatgtttcaagtgtctttgcttct |
35020549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 131
Target Start/End: Complemental strand, 1558353 - 1558290
Alignment:
| Q |
68 |
ttagtgggatatatttcattgttttgatgtttggtctttttcttttgttgggttagatttgttg |
131 |
Q |
| |
|
||||||||||| ||| ||||||| ||| |||||||||| |||||||| | ||||||||||||| |
|
|
| T |
1558353 |
ttagtgggataattttgattgtttagatatttggtctttctcttttgtagtgttagatttgttg |
1558290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 171
Target Start/End: Original strand, 48769986 - 48770089
Alignment:
| Q |
68 |
ttagtgggatatatttcattgttttgatgtttggtctttttcttttgttgggttagatttgttgctagacttggctgcatttctttgtttagccgtttag |
167 |
Q |
| |
|
|||||||||||| ||| ||||||| ||| |||| ||||| |||||||| | ||||||||||||| | | |||||||||||| ||||||||| | |||| |
|
|
| T |
48769986 |
ttagtgggatatttttgattgtttagatatttgatctttctcttttgtagtgttagatttgttggtgatcatggctgcatttccttgtttagcagcttag |
48770085 |
T |
|
| Q |
168 |
gttt |
171 |
Q |
| |
|
|||| |
|
|
| T |
48770086 |
gttt |
48770089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 171
Target Start/End: Complemental strand, 8455537 - 8455411
Alignment:
| Q |
45 |
tttggatggttgctaaatttatattagtgggatatatttcattgttttgatgtttggtctttttcttttgttgggttagatttgttgctagacttggctg |
144 |
Q |
| |
|
|||||||||||| ||| | ||| ||||||||||| |||| |||||||||| |||||||||| |||| | | | | | ||| ||||| | ||||||||| |
|
|
| T |
8455537 |
tttggatggttgataattctatcttagtgggatagatttgtttgttttgatatttggtctttctcttatatagtgatcgatatgttgatgaacttggctg |
8455438 |
T |
|
| Q |
145 |
catttctttgtttagccgtttaggttt |
171 |
Q |
| |
|
| |||| ||||||||| ||| |||||| |
|
|
| T |
8455437 |
cttttccttgtttagcagttcaggttt |
8455411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 159
Target Start/End: Original strand, 18979958 - 18980049
Alignment:
| Q |
68 |
ttagtgggatatatttcattgttttgatgtttggtctttttcttttgttgggttagatttgttgctagacttggctgcatttctttgtttag |
159 |
Q |
| |
|
||||||||||| ||| ||||||| ||| |||||||||| |||||||| | ||||||||||||| | | |||||||||||| |||||||| |
|
|
| T |
18979958 |
ttagtgggataattttgattgtttagatatttggtctttctcttttgtagtgttagatttgttggtgatcatggctgcatttccttgtttag |
18980049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 19002 - 19095
Alignment:
| Q |
78 |
atatttcattgttttgatgtttggtctttttcttttgttgggttagatttgttgctagacttggctgcatttctttgtttagccgtttaggttt |
171 |
Q |
| |
|
|||||| ||||||||||| |||||||||| |||||| | | | ||||| ||||| | |||||||||| |||| ||||||||| ||| |||||| |
|
|
| T |
19002 |
atatttgattgttttgatatttggtctttctcttttatagtgctagatatgttgatgaacttggctgcttttcattgtttagcagttcaggttt |
19095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 171
Target Start/End: Original strand, 19168253 - 19168379
Alignment:
| Q |
45 |
tttggatggttgctaaatttatattagtgggatatatttcattgtttt-gatgtttggtctttttcttttgttgggttagatttgttgctagacttggct |
143 |
Q |
| |
|
|||||||||||| ||| | ||| |||||| |||| |||| ||| |||| ||| |||||||||| |||||| | | | ||||| ||||| | |||||||| |
|
|
| T |
19168253 |
tttggatggttgataattctatcttagtgtgatagatttgattttttttgatatttggtctttctcttttatagtgctagatatgttggtgaacttggct |
19168352 |
T |
|
| Q |
144 |
gcatttctttgtttagccgtttaggttt |
171 |
Q |
| |
|
||| ||| ||||||||| |||||||||| |
|
|
| T |
19168353 |
gca-ttccttgtttagcagtttaggttt |
19168379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University