View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10522_low_3 (Length: 250)
Name: NF10522_low_3
Description: NF10522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10522_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 35020381 - 35020136
Alignment:
| Q |
1 |
taaatcttcatcaacggttgaaagcagcacatccatgaaatcttgttcacgaccagaattcttgttacgtttgtgttgatcaagccaaacacaaacaaac |
100 |
Q |
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| T |
35020381 |
taaatcttcatcaacggttgaaagcagcacatccatgaaatcttgttcacgaccagaattcttcttatgtttgtgctgatcaagccaaacacaaacaaag |
35020282 |
T |
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| Q |
101 |
tcatccatttcttttgctgttttcttcatttgcttctgttttccatccaaatccaaccatctcaaatacggtaacgtgtcagaaacaacaaatgaaccac |
200 |
Q |
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| T |
35020281 |
tcatctaactcttttgctgttttcttcatttgcttctgttttccatccaaatccaaccatctcaaatacggtaacatgtcagaaacaacaaatgaaccac |
35020182 |
T |
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| Q |
201 |
taagatcnnnnnnntctctaatcatttttcttatcctttgcttctc |
246 |
Q |
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| T |
35020181 |
taagattaaaaaaatctctaatcatttttcttatcctttgattctc |
35020136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 59 - 207
Target Start/End: Complemental strand, 35036522 - 35036374
Alignment:
| Q |
59 |
ttcttgttacgtttgtgttgatcaagccaaacacaaacaaactcatccatttcttttgctgttttcttcatttgcttctgttttccatccaaatccaacc |
158 |
Q |
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| T |
35036522 |
ttcttgttgcgtttgtgttgatcgagccaaacttgaacaaaatcatctaactctttagccgttttcttcatctgcttctgttttccatccaaatccaacc |
35036423 |
T |
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| Q |
159 |
atctcaaatacggtaacgtgtcagaaacaacaaatgaaccactaagatc |
207 |
Q |
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| T |
35036422 |
atctaaaaaaccgcaacatgtcagatataacaaatgaaccgctgagatc |
35036374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 66 - 206
Target Start/End: Complemental strand, 35044646 - 35044506
Alignment:
| Q |
66 |
tacgtttgtgttgatcaagccaaacacaaacaaactcatccatttcttttgctgttttcttcatttgcttctgttttccatccaaatccaaccatctcaa |
165 |
Q |
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|||||||||||||||||| |||| | |||||||||||||| ||||| || ||||||||||||| ||||| |||||||||||||||||||||||| || |
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| T |
35044646 |
tacgtttgtgttgatcaatccaaccttgaacaaactcatccaactctttagcagttttcttcatttccttctcttttccatccaaatccaaccatcttaa |
35044547 |
T |
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| Q |
166 |
atacggtaacgtgtcagaaacaacaaatgaaccactaagat |
206 |
Q |
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| T |
35044546 |
aaacggcaacgaatcagatataacaaaggaaccacaaagat |
35044506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 35030287 - 35030251
Alignment:
| Q |
1 |
taaatcttcatcaacggttgaaagcagcacatccatg |
37 |
Q |
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| T |
35030287 |
taaatcttcatcaatggtggaaagcagcacatccatg |
35030251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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