View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10522_low_4 (Length: 224)
Name: NF10522_low_4
Description: NF10522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10522_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 9 - 149
Target Start/End: Original strand, 13878949 - 13879089
Alignment:
| Q |
9 |
aggaggagcacagagacatttggcacaacatttttgacagaagaacatgcatggcttgtgatattgtgtctgtccacatcttcttgtgcattgagatggg |
108 |
Q |
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| T |
13878949 |
aggaggaacacagagacatttggcacaacatttttgacagaagaacatgcatggcttgtgatattgtgtctgtccacatcttcttgtgcattgagatgga |
13879048 |
T |
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| Q |
109 |
cactctgatcaaatcaatttcacaaacataaatccattaga |
149 |
Q |
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| T |
13879049 |
cactctgatcaaatcaatttcacaaacataaatccattaga |
13879089 |
T |
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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 115
Target Start/End: Complemental strand, 2638142 - 2638060
Alignment:
| Q |
33 |
acaacatttttgacagaagaacatgcatggcttgtgatattgtgtctgtccacatcttcttgtgcattgagatgggcactctg |
115 |
Q |
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| T |
2638142 |
acaacacttctgacagaaaaacatgcaaggtttgtggtattgtgtctgtccacatctccttgagcattgggatgggcattctg |
2638060 |
T |
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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 117
Target Start/End: Complemental strand, 3729952 - 3729868
Alignment:
| Q |
33 |
acaacatttttgacagaagaacatgcatggcttgtgatattgtgtctgtccacatcttcttgtgcattgagatgggcactctgat |
117 |
Q |
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| T |
3729952 |
acaacacttttgacaaaagaacatgcatggcttgtgatattgagtatttttgcatctccttgagcattgagatgggcattctgat |
3729868 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 33426651 - 33426704
Alignment:
| Q |
9 |
aggaggagcacagagacatttggcacaacatttttgacagaagaacatgcatgg |
62 |
Q |
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| T |
33426651 |
aggaggaacacaaagacatgtagcacaacatttttggcagaaaaacatgcatgg |
33426704 |
T |
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