View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10523_1 (Length: 749)

Name: NF10523_1
Description: NF10523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10523_1
NF10523_1
[»] chr1 (19 HSPs)
chr1 (343-749)||(47771496-47771902)
chr1 (426-749)||(47775648-47775971)
chr1 (12-115)||(47772372-47772479)
chr1 (191-282)||(47771979-47772070)
chr1 (568-721)||(6525878-6526031)
chr1 (597-738)||(47710834-47710975)
chr1 (588-738)||(47715536-47715686)
chr1 (597-738)||(47700548-47700689)
chr1 (597-738)||(47743312-47743453)
chr1 (597-702)||(47757713-47757818)
chr1 (620-738)||(6514529-6514647)
chr1 (425-495)||(47757514-47757584)
chr1 (604-721)||(6502495-6502612)
chr1 (425-479)||(47715394-47715448)
chr1 (578-719)||(6510123-6510264)
chr1 (425-479)||(47710683-47710737)
chr1 (654-701)||(47679487-47679534)
chr1 (654-701)||(47691146-47691193)
chr1 (622-719)||(6497181-6497278)
[»] chr5 (4 HSPs)
chr5 (542-736)||(27367879-27368073)
chr5 (555-702)||(28826762-28826911)
chr5 (532-702)||(28859207-28859377)
chr5 (555-702)||(28843717-28843863)
[»] chr8 (1 HSPs)
chr8 (597-738)||(11225575-11225716)
[»] scaffold0341 (2 HSPs)
scaffold0341 (578-721)||(4147-4290)
scaffold0341 (578-721)||(11803-11946)


Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 343 - 749
Target Start/End: Complemental strand, 47771902 - 47771496
Alignment:
Q  343 tatttattcctaaatatcagagagaccaacttttacaattttatagaccaatttagtgatttacacataaaagaatatatattcacccttatgaatgaat 442  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47771902 tatttattcctaaatttcagagagaccaacttttacaattttatagaccaatttagtgatttacacataaaagaatatatattcacccttatgaatgaat 47771803  T
Q  443 tctatcgagggtatggatcagtattggaagcgtggttcatcgattcacccgatgttgttgaacctatattgccagcccataactccatgtcttgcaggct 542  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  47771802 tctatcgagggtatggatcagtattggaagcgtggttcaccgattcacccgatgttgttgaacctatattgccagcccataactccatgtcttgtaggct 47771703  T
Q  543 tctagttccacttccataaaaataggcaggttttgaaggtattgagagagtgagagaataactattaagcatgagtgcaacagcagccatggttggtctg 642  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  47771702 tctggttccacttccataaaaataggcaggttttgaaggtattgagagagtgagagaataactattaagcatgagtgcaacagtagccatggttggtctg 47771603  T
Q  643 tcaactacattttcttgaacacaaagtaaggcaatatggatgcatctcattatttcatttgctgaaatattgtttaatgctgcatctatcatattttgtg 742  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47771602 tcaactacattttcttgaacacaaagtaagccaatatggatgcatctcattatttcatttgctgaaatattgtttaatgctgcatctatcatattttgtg 47771503  T
Q  743 ccttccc 749  Q
    |||||||    
T  47771502 ccttccc 47771496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 426 - 749
Target Start/End: Complemental strand, 47775971 - 47775648
Alignment:
Q  426 cacccttatgaatgaattctatcgagggtatggatcagtattggaagcgtggttcatcgattcacccgatgttgttgaacctatattgccagcccataac 525  Q
    |||||||||||||||| | ||||||||||||||||||||||| ||||| ||||| |||||||||||||||  ||||||| ||||||||||||||||||||    
T  47775971 cacccttatgaatgaaatttatcgagggtatggatcagtatttgaagcctggttaatcgattcacccgatactgttgaatctatattgccagcccataac 47775872  T
Q  526 tccatgtcttgcaggcttctagttccacttccataaaaataggcaggttttgaaggtattgagagagtgagagaataactattaagcatgagtgcaacag 625  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47775871 tccatgtcatgtaggcttctagttccacttccataaaaataggcaggttttgaaggtattgagagagtgagagaataactattaagcatgagtgcaacag 47775772  T
Q  626 cagccatggttggtctgtcaactacattttcttgaacacaaagtaaggcaatatggatgcatctcattatttcatttgctgaaatattgtttaatgctgc 725  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  47775771 cagccatggttggtctgtcaactacattttcttgaacacaaagtaaggcaatatggatacatctcattatttcatttgctgaaatattgtttaatgctgg 47775672  T
Q  726 atctatcatattttgtgccttccc 749  Q
    |||||| ||||| ||||| |||||    
T  47775671 atctataatattgtgtgctttccc 47775648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 47772479 - 47772372
Alignment:
Q  12 tattctcgtgggaagaaggacagctttgatctcttcaatatat----ttcaaaagaaaagtattattatatggagaaatgttcacaattccaatccaaag 107  Q
    ||||||||||| |||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  47772479 tattctcgtggaaagaaggacagctttgatctcttcaatatatcactttcaaaagaaaagtattattatatggagaaatgttcacgattccgatccaaag 47772380  T
Q  108 ggtggatg 115  Q
    ||||||||    
T  47772379 ggtggatg 47772372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 191 - 282
Target Start/End: Complemental strand, 47772070 - 47771979
Alignment:
Q  191 taaacatttagtctaacaatacttaaataagttatacgccaaccccatacatcgcacgggtctcactatctagagcacatcataatctaaaa 282  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||| ||||||    
T  47772070 taaatatttagtctaacaatacttaaataagttatacgccaaccccacacatcgcgcgggtctcactatctagagcatatcataaactaaaa 47771979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 568 - 721
Target Start/End: Complemental strand, 6526031 - 6525878
Alignment:
Q  568 gcaggttttgaaggtattgagagagtgagagaataactattaagcatgagtgcaacagcagccatggttggtctgtcaactacattttcttgaacacaaa 667  Q
    |||||||  |||||| | |||||||||||||||| |||||||||||| ||| ||| || |||||| ||||| |||  | || ||||||||||||||||||    
T  6526031 gcaggttcggaaggtctcgagagagtgagagaatgactattaagcattagtacaatagaagccatagttggcctgctagctgcattttcttgaacacaaa 6525932  T
Q  668 gtaaggcaatatggatgcatctcattatttcatttgctgaaatattgtttaatg 721  Q
    ||||  |||| |||||||||||||||||||| ||  |||||  |||||||||||    
T  6525931 gtaacccaatgtggatgcatctcattatttcgttcactgaatcattgtttaatg 6525878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 597 - 738
Target Start/End: Original strand, 47710834 - 47710975
Alignment:
Q  597 agaataactattaagcatgagtgcaacagcagccatggttggtctgtcaactacattttcttgaacacaaagtaaggcaatatggatgcatctcattatt 696  Q
    |||||||||| |||||||||||||||| |  ||||| |||||||| ||||| | ||||||||||||||| ||||| ||||| || |||||||||||||||    
T  47710834 agaataactactaagcatgagtgcaacggttgccatagttggtctttcaaccaaattttcttgaacacatagtaaagcaatgtgaatgcatctcattatt 47710933  T
Q  697 tcatttgctgaaatattgtttaatgctgcatctatcatattt 738  Q
    ||||||  ||||  |||| |||||| || |||||| ||||||    
T  47710934 tcattttgtgaaccattgcttaatgatggatctattatattt 47710975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 588 - 738
Target Start/End: Original strand, 47715536 - 47715686
Alignment:
Q  588 gagagtgagagaataactattaagcatgagtgcaacagcagccatggttggtctgtcaactacattttcttgaacacaaagtaaggcaatatggatgcat 687  Q
    |||||||| | |||||||| ||||||||||| |||| |  |||||| ||||||| ||||| | ||||||||||||||| ||||| ||||| || ||||||    
T  47715536 gagagtgatataataactactaagcatgagtacaacggttgccatgattggtctttcaaccaaattttcttgaacacatagtaaagcaatgtgaatgcat 47715635  T
Q  688 ctcattatttcatttgctgaaatattgtttaatgctgcatctatcatattt 738  Q
    |||||||||||||||  ||||  |||| |||||| || |||||| ||||||    
T  47715636 ctcattatttcatttcgtgaaccattgcttaatgatggatctattatattt 47715686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 597 - 738
Target Start/End: Original strand, 47700548 - 47700689
Alignment:
Q  597 agaataactattaagcatgagtgcaacagcagccatggttggtctgtcaactacattttcttgaacacaaagtaaggcaatatggatgcatctcattatt 696  Q
    |||||||||| ||||||||||| |||  |  |||||| ||||||| ||||| | ||||||||||||||| ||||| ||||| || |||||||||||||||    
T  47700548 agaataactactaagcatgagtacaatggttgccatgtttggtctttcaaccaaattttcttgaacacatagtaaagcaatgtgaatgcatctcattatt 47700647  T
Q  697 tcatttgctgaaatattgtttaatgctgcatctatcatattt 738  Q
    ||||||  ||||   |||||||||| || |||||| ||||||    
T  47700648 tcattttgtgaaccgttgtttaatgatggatctattatattt 47700689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 597 - 738
Target Start/End: Original strand, 47743312 - 47743453
Alignment:
Q  597 agaataactattaagcatgagtgcaacagcagccatggttggtctgtcaactacattttcttgaacacaaagtaaggcaatatggatgcatctcattatt 696  Q
    |||||||||| ||||||||| | |||| |  |||||| ||||||| ||||| | ||||||||||||||| ||||| ||||| || |||||||||||||||    
T  47743312 agaataactactaagcatgactacaacggttgccatgattggtctttcaaccaaattttcttgaacacatagtaaagcaatgtgaatgcatctcattatt 47743411  T
Q  697 tcatttgctgaaatattgtttaatgctgcatctatcatattt 738  Q
    ||||||  ||||  |||| |||||| || |||||| ||||||    
T  47743412 tcatttcgtgaaccattgcttaatgatggatctattatattt 47743453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 597 - 702
Target Start/End: Original strand, 47757713 - 47757818
Alignment:
Q  597 agaataactattaagcatgagtgcaacagcagccatggttggtctgtcaactacattttcttgaacacaaagtaaggcaatatggatgcatctcattatt 696  Q
    |||||||||| ||||||||||| |||  |  |||||||||||||| ||||| | ||||||||||||||| ||||| ||||| || |||||||||||||||    
T  47757713 agaataactactaagcatgagtacaatggttgccatggttggtctttcaaccaaattttcttgaacacatagtaaagcaatgtgaatgcatctcattatt 47757812  T
Q  697 tcattt 702  Q
    ||||||    
T  47757813 tcattt 47757818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 620 - 738
Target Start/End: Original strand, 6514529 - 6514647
Alignment:
Q  620 caacagcagccatggttggtctgtcaactacattttcttgaacacaaagtaaggcaatatggatgcatctcattatttcatttgctgaaatattgtttaa 719  Q
    |||||| ||||||||||||||||  | ||||||| |||||||||||||||||  |||||||||| ||||||||||| ||||||  |||   |||||||||    
T  6514529 caacagaagccatggttggtctgctagctacattctcttgaacacaaagtaatccaatatggatacatctcattatctcatttagtgagtcattgtttaa 6514628  T
Q  720 tgctgcatctatcatattt 738  Q
    || || |||||| ||||||    
T  6514629 tgttggatctatgatattt 6514647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 425 - 495
Target Start/End: Original strand, 47757514 - 47757584
Alignment:
Q  425 tcacccttatgaatgaattctatcgagggtatggatcagtattggaagcgtggttcatcgattcacccgat 495  Q
    ||||||||||||||||| |||||||||||||||| |||||| | ||||| ||||| |||||||||||||||    
T  47757514 tcacccttatgaatgaaatctatcgagggtatgggtcagtaattgaagcatggtttatcgattcacccgat 47757584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 604 - 721
Target Start/End: Original strand, 6502495 - 6502612
Alignment:
Q  604 ctattaagcatgagtgcaacagcagccatggttggtctgtcaactacattttcttgaacacaaagtaaggcaatatggatgcatctcattatttcatttg 703  Q
    ||||||||||| | | ||| || ||||||||||||||| |  |||| ||| |||||||||||||||||  |||||||||| ||||| | ||||||||||     
T  6502495 ctattaagcatcactacaatagaagccatggttggtctatttactatattctcttgaacacaaagtaatccaatatggatacatcttagtatttcatttc 6502594  T
Q  704 ctgaaatattgtttaatg 721  Q
     ||||  |||||||||||    
T  6502595 gtgaatcattgtttaatg 6502612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 425 - 479
Target Start/End: Original strand, 47715394 - 47715448
Alignment:
Q  425 tcacccttatgaatgaattctatcgagggtatggatcagtattggaagcgtggtt 479  Q
    ||||||||||||||||| ||||||||||||||||||||||| | ||||| |||||    
T  47715394 tcacccttatgaatgaaatctatcgagggtatggatcagtaattgaagcatggtt 47715448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 578 - 719
Target Start/End: Original strand, 6510123 - 6510264
Alignment:
Q  578 aaggtattgagagagtgagagaataactattaagcatgagtgcaacagcagccatggttggtctgtcaactacattttcttgaacacaaagtaaggcaat 677  Q
    |||| |||| |||||| | ||||| |||||||||||| | | |||||| ||||||| |||| |||  | ||||||| |||||||||||||||||  ||||    
T  6510123 aaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaat 6510222  T
Q  678 atggatgcatctcattatttcatttgctgaaatattgtttaa 719  Q
    ||| || ||||| |  |||||||||  ||||  |||||||||    
T  6510223 atgaatacatctaaaaatttcatttcgtgaatcattgtttaa 6510264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 425 - 479
Target Start/End: Original strand, 47710683 - 47710737
Alignment:
Q  425 tcacccttatgaatgaattctatcgagggtatggatcagtattggaagcgtggtt 479  Q
    ||||||||||||||||| |||||||||||||||| |||||| | ||||| |||||    
T  47710683 tcacccttatgaatgaaatctatcgagggtatgggtcagtaattgaagcatggtt 47710737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 654 - 701
Target Start/End: Complemental strand, 47679534 - 47679487
Alignment:
Q  654 ttcttgaacacaaagtaaggcaatatggatgcatctcattatttcatt 701  Q
    ||||||||||||||||||  ||| |||||||||||||||| |||||||    
T  47679534 ttcttgaacacaaagtaatccaacatggatgcatctcattttttcatt 47679487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 654 - 701
Target Start/End: Complemental strand, 47691193 - 47691146
Alignment:
Q  654 ttcttgaacacaaagtaaggcaatatggatgcatctcattatttcatt 701  Q
    ||||||||||||||||||  ||| |||||||||||||||| |||||||    
T  47691193 ttcttgaacacaaagtaatccaacatggatgcatctcattgtttcatt 47691146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 622 - 719
Target Start/End: Original strand, 6497181 - 6497278
Alignment:
Q  622 acagcagccatggttggtctgtcaactacattttcttgaacacaaagtaaggcaatatggatgcatctcattatttcatttgctgaaatattgtttaa 719  Q
    |||| ||||||| |||| |||  | ||||||| |||||||||||||||||  ||||||| || |||||||  |||||||||  ||||  |||||||||    
T  6497181 acagtagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgtttaa 6497278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 2e-36; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 542 - 736
Target Start/End: Original strand, 27367879 - 27368073
Alignment:
Q  542 ttctagttccacttccataaaaataggcaggttttgaaggtattgagagagtgagagaataactattaagcatgagtgcaacagcagccatggttggtct 641  Q
    ||||||||||||||||   |||||| |||||||| ||||||||||||||||  |||||||||||||||||||||| |||||||| |||||||||||||||    
T  27367879 ttctagttccacttcctataaaatacgcaggtttcgaaggtattgagagagcaagagaataactattaagcatgactgcaacagaagccatggttggtct 27367978  T
Q  642 gtcaactacattttcttgaacacaaagtaaggcaatatggatgcatctcattatttcatttgctgaaatattgtttaatgctgcatctatcatat 736  Q
     ||||  |  ||||||||||  || |||||  |||| |||||||||||||  |||||||||  |||||| || ||||||| || |||||| ||||    
T  27367979 atcaatcaagttttcttgaatgcagagtaaaccaatgtggatgcatctcaagatttcattttgtgaaatgttttttaatgatggatctataatat 27368073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 555 - 702
Target Start/End: Original strand, 28826762 - 28826911
Alignment:
Q  555 tccataaaaataggcaggttttgaaggtattgagagagtgagagaataactatta---agcatgagtgcaacagcagccatggttggtctgtcaactaca 651  Q
    |||||||||| | ||||||| || |||||||| ||||||||||||||| ||  ||   |||||||||||||  | ||||||||||||||  | | |||||    
T  28826762 tccataaaaa-atgcaggttctgcaggtattgggagagtgagagaatagctgctacttagcatgagtgcaatggtagccatggttggtcgtttagctaca 28826860  T
Q  652 ttttcttgaacacaaagtaaggcaatatggatgcatctcattatttcattt 702  Q
    || ||||| ||||| |||||| ||||||| ||||||||||| |||||||||    
T  28826861 ttgtcttggacacatagtaagccaatatgaatgcatctcatgatttcattt 28826911  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 532 - 702
Target Start/End: Original strand, 28859207 - 28859377
Alignment:
Q  532 tcttgcaggcttctagttccact-tccataaaaataggcaggttttgaaggtattgagagagtgagagaataactattaagcatgagtgcaacagcagcc 630  Q
    ||||| ||||||||||||| ||| |||||||||| | ||||||| ||||||||| ||||| | ||||||||| ||| | ||||||||| |||    ||||    
T  28859207 tcttgaaggcttctagttctactatccataaaaa-atgcaggttctgaaggtatagagagggcgagagaatagctacttagcatgagtacaatgttagcc 28859305  T
Q  631 atggttggtctgtcaactacattttcttgaacacaaagtaaggcaatatggatgcatctcattatttcattt 702  Q
    |||||||||||   |  ||| || ||||| || ||||||||  ||||||| ||||||||||| |||||||||    
T  28859306 atggttggtcttctagttacgttgtcttggacgcaaagtaaaccaatatgaatgcatctcatgatttcattt 28859377  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 555 - 702
Target Start/End: Original strand, 28843717 - 28843863
Alignment:
Q  555 tccataaaaataggcaggttttgaaggtattgagagagtgagagaataactattaagcatgagtgcaacagcagccatggttggtctgtcaactacattt 654  Q
    |||||||||| | ||||||| ||||||||| | ||||||||||||||  ||| | | ||  ||| |||  | |||||||||| ||||   | |||||||     
T  28843717 tccataaaaa-atgcaggttctgaaggtatagggagagtgagagaattgctacttatcagaagtacaatggtagccatggttcgtcttctagctacattg 28843815  T
Q  655 tcttgaacacaaagtaaggcaatatggatgcatctcattatttcattt 702  Q
    ||||| |||||||||||  ||||||| ||||||||||| |||||||||    
T  28843816 tcttgcacacaaagtaacccaatatgaatgcatctcatgatttcattt 28843863  T

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Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 597 - 738
Target Start/End: Complemental strand, 11225716 - 11225575
Alignment:
Q  597 agaataactattaagcatgagtgcaacagcagccatggttggtctgtcaactacattttcttgaacacaaagtaaggcaatatggatgcatctcattatt 696  Q
    |||||||||| ||||||||| | |||| |  |||||| ||||||| ||||| | ||||||||||||||| ||||| ||||| || |||||||||||||||    
T  11225716 agaataactactaagcatgactacaacggttgccatgattggtctttcaaccaaattttcttgaacacatagtaaagcaatgtgaatgcatctcattatt 11225617  T
Q  697 tcatttgctgaaatattgtttaatgctgcatctatcatattt 738  Q
    ||||||  ||||  |||| |||||| || |||||| ||||||    
T  11225616 tcatttcgtgaaccattgcttaatgatggatctattatattt 11225575  T

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Target: scaffold0341 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 578 - 721
Target Start/End: Original strand, 4147 - 4290
Alignment:
Q  578 aaggtattgagagagtgagagaataactattaagcatgagtgcaacagcagccatggttggtctgtcaactacattttcttgaacacaaagtaaggcaat 677  Q
    |||| |||| |||||| | ||||| |||||||||||| | | |||||| ||||||| |||| |||  | ||||||| |||||||||||||||||  ||||    
T  4147 aaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaat 4246  T
Q  678 atggatgcatctcattatttcatttgctgaaatattgtttaatg 721  Q
    |||||| ||||| | ||||||||||  ||||  |||||||||||    
T  4247 atggatacatcttagtatttcatttcgtgaatcattgtttaatg 4290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 578 - 721
Target Start/End: Original strand, 11803 - 11946
Alignment:
Q  578 aaggtattgagagagtgagagaataactattaagcatgagtgcaacagcagccatggttggtctgtcaactacattttcttgaacacaaagtaaggcaat 677  Q
    |||| |||| |||||| | ||||| |||||||||||| | | |||||| ||||||| |||| |||  | ||||||| |||||||||||||||||  ||||    
T  11803 aaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaat 11902  T
Q  678 atggatgcatctcattatttcatttgctgaaatattgtttaatg 721  Q
    |||||| ||||| | ||||||||||  ||||  |||||||||||    
T  11903 atggatacatcttagtatttcatttcgtgaatcattgtttaatg 11946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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