View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10523_2 (Length: 574)
Name: NF10523_2
Description: NF10523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10523_2 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 16 - 407
Target Start/End: Complemental strand, 31658974 - 31658583
Alignment:
| Q |
16 |
catcacacttgcaaaagttatttgcattcagatataaatttggaatccattgtgtcatcaaatgactcttctatattactcagttttgataacaacattc |
115 |
Q |
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| T |
31658974 |
catcacacttgcaaaagttatttgcattcagatataaatttggaatccattttgtcatcaaatgactcttctatattacttagttttgataacaacattc |
31658875 |
T |
|
| Q |
116 |
caatcaaagaagaaaacgagatgccaccatcaccattgccatttcttgcatctacaatagaggatcctaaggaagagattcatgatgattattcttctca |
215 |
Q |
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| T |
31658874 |
caattaaagaagaaaactcgtttccaccatcaccattgccatttcttgcatctacaaaagaggatcctaaggaagagattcatgatgattattcttctca |
31658775 |
T |
|
| Q |
216 |
aaatcaattgttctcatcagataacctcatatcatgtaactttgaattttgttttgattatttgagacatgccactatgctatcatcgattgaatcattt |
315 |
Q |
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| T |
31658774 |
aaatcaattgttctcatcagataacctcatatcatgtaactttgaagtttattttgattatttgagacgtgccactatgctatcatcgattgaatcattt |
31658675 |
T |
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| Q |
316 |
gaatttgagaatgtttatgaccagttaggattttgatggctatggatatgtttctgtctaagtgtaaatttattttcaaagtttggcattgg |
407 |
Q |
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| T |
31658674 |
gaatttgagaatgtttatgaccagttaggattttgatggctatggatatgtttctgtctaagtgtaaatttattttcaaagtttggcattgg |
31658583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 146 - 327
Target Start/End: Original strand, 31650372 - 31650553
Alignment:
| Q |
146 |
caccattgccatttcttgcatctacaatagaggatcctaaggaagagattcatgatgattattcttctcaaaatcaattgttctcatcagataacctcat |
245 |
Q |
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| T |
31650372 |
caccattgccacttcttgcatctacaaaaggagatcccaaggaagagatacatcatgatcattttcctcaaaaccaattgttctcaccggagaatctcca |
31650471 |
T |
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| Q |
246 |
atcatgtaactttgaattttgttttgattatttgagacatgccactatgctatcatcgattgaatcatttgaatttgagaat |
327 |
Q |
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| T |
31650472 |
attatgcgattttgatgtttattttgattatttgagacatgtcagtgagtcatcatcgagtgaatctttttaatttgagaat |
31650553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 31657244 - 31657342
Alignment:
| Q |
16 |
catcacacttgcaaaagttatttgcattcagatataaatttggaatccattgtgtcatcaaatgactcttctatattactcagttttgataacaacatt |
114 |
Q |
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| T |
31657244 |
catcacacttgcaaaagctcttaccattcagacataaaattggaatccattttgtgctacgatgactcttctatattacttagtttcgataacaacatt |
31657342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 508 - 546
Target Start/End: Complemental strand, 31658558 - 31658520
Alignment:
| Q |
508 |
taatgggagatttatttgatcgtttaacttatgatgtct |
546 |
Q |
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| T |
31658558 |
taatgggagatttatttgatcgtttaacttatgatgtct |
31658520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 31657390 - 31657434
Alignment:
| Q |
150 |
attgccatttcttgcatctacaatagaggatcctaaggaagagat |
194 |
Q |
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| T |
31657390 |
attgccacttcttgcatctacaaaagaggaacccaaggaagagat |
31657434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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