View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10523_3 (Length: 491)
Name: NF10523_3
Description: NF10523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10523_3 |
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Alignment Details
Target: chr4 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 15 - 461
Target Start/End: Original strand, 56230961 - 56231407
Alignment:
| Q |
15 |
tatcaacaataggaggaaactttgtttctggagttaatgtttttggcttaggaaatggaactgcgaaaggtggttctcccaaagcaagagttgctgctta |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56230961 |
tatcaacaataggaggaaactttgtttctggagttaatgtttttggcttaggaaatggaactgcgaaaggtggttctcccaaagcaagagttgctgctta |
56231060 |
T |
|
| Q |
115 |
caaagtctgttggccagcaattgatcacaacggatgttttgatgctgatataatggcagcctttgatatggctattcatgatggagttgatgttctttcc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56231061 |
caaagtctgttggccagcaattgatcacaacggatgttttgatgctgatataatggcagcctttgatatggctattcatgatggagttgatgttctttcc |
56231160 |
T |
|
| Q |
215 |
ctttctcttggaggtgatgcttctgattactttgatgatggcctttcaatcgctgcatttcacgcagttaaggaaggcatcactgtgttgtgttcagctg |
314 |
Q |
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| T |
56231161 |
ctttctcttggtggtgatgcttctgattactttgatgatggcctttcaatcgctgcatttcacgcagttaaggaaggcatcactgtgttgtgttcagctg |
56231260 |
T |
|
| Q |
315 |
gaaattcaggaccaacacctggaactgtttcaaatgttgcaccttggatattaactgttgctgcaagtaccatagatagagattttgatgctagtgttca |
414 |
Q |
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| T |
56231261 |
gaaattcaggaccaacacctggaactgtttcaaatgttgcaccttggatattaactgttgctgcaagtaccatagatagagattttgatgctagtgttca |
56231360 |
T |
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| Q |
415 |
actccataatggacaacactttagggtattatccaatttttcttctt |
461 |
Q |
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| T |
56231361 |
actccataatggacaacactttagggtattatccaatttttcttctt |
56231407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 15 - 471
Target Start/End: Original strand, 39188687 - 39189146
Alignment:
| Q |
15 |
tatcaacaataggaggaaactttgtttctggagttaatgtttttggcttaggaaatggaactgcgaaaggtggttctcccaaagcaagagttgctgctta |
114 |
Q |
| |
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|||||||| ||||||| ||||||||||| |||| |||| || |||||||||| || |||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
39188687 |
tatcaacattaggagggaactttgtttccggagctaattttgttggcttaggcaacggaactgctaaaggtggctctcccaaagcaagagttgctgctta |
39188786 |
T |
|
| Q |
115 |
caaagtctgttggccagcaattgatcacaacggatgttttgatgctgatataatggcagcctttgatatggctattcatgatggagttgatgttctttcc |
214 |
Q |
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||||||||| |||||| |||||||| || || ||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39188787 |
caaagtctgctggccaccaattgatggcagcgaatgctttgatgctgatatcatggcagcctttgatatggctattcatgatggggttgatgttctttcc |
39188886 |
T |
|
| Q |
215 |
ctttctcttggaggtgatgcttctgattactttgatgatggcctttcaatcgctgcatttcacgcagttaaggaaggcatcactgtgttgtgttcagctg |
314 |
Q |
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| ||||||||| || |||| ||||||||||||||||| |||||||| ||||||||||| || |||||| ||||||||||||||||||||||||||| |
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| T |
39188887 |
atatctcttggaagtcctgctgttgattactttgatgatgctctttcaattgctgcatttcatgctgttaagaaaggcatcactgtgttgtgttcagctg |
39188986 |
T |
|
| Q |
315 |
gaaattcaggaccaacacctggaactgtttcaaatgttgcaccttggatattaactgttgctgcaagtaccatagatagagattttgatgctagtgttca |
414 |
Q |
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||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| || |||||| |
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| T |
39188987 |
gaaattctggaccaacatttggaactgtttcaaatgttgcaccttggatattaactgttgctgcaagtaccttagatagagagtttgatactgttgttca |
39189086 |
T |
|
| Q |
415 |
actccataatggacaacactttagggtattatccaatttttct---tcttgtgacatacc |
471 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
39189087 |
actccataatggacaacactttaaggtattatccaatttttcttcatcttgtgacatacc |
39189146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 396
Target Start/End: Complemental strand, 31050980 - 31050907
Alignment:
| Q |
323 |
ggaccaacacctggaactgtttcaaatgttgcaccttggatattaactgttgctgcaagtaccatagatagaga |
396 |
Q |
| |
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|||||||| ||||||| |||| | |||||||| |||||| | || ||||||||||| ||||| || |||||||| |
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| T |
31050980 |
ggaccaacccctggaagtgttactaatgttgctccttgggtgttcactgttgctgctagtacaattgatagaga |
31050907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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