View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10523_4 (Length: 475)
Name: NF10523_4
Description: NF10523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10523_4 |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 28 - 455
Target Start/End: Original strand, 51273692 - 51274120
Alignment:
| Q |
28 |
actttgctccaacaaatgaaagaacaagaaaaccagaaaaaatggcacttcaattttatctcaaagcgtaaacttctcatttcgttctcaccaaatctta |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
51273692 |
actttgctccaacaaatgaaagaacaagaaaaccagaaaaaatggcacttcaattttatctcaaagcgtaaacttctcatttcgttctcaccaaatctca |
51273791 |
T |
|
| Q |
128 |
atctttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatcctaaacttgacaatataacaagnnnnnnncatgtcttatattc |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
51273792 |
atctttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatcctaaacttgacaatataacaagaaaaaaacatgtcttatattc |
51273891 |
T |
|
| Q |
228 |
gagaattgtcggattttcaaatggcttgtttctctgcaagaaaaccacacgtggtagagtctaccatgtatgcaacatcctcacaaaagattggatcaaa |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51273892 |
gagaattgtcggattttcaaatggcttgtttctctgcaagaaaaccacacgtggtagagtctaccatgtatgcaacatcctcacaaaagattggatcaaa |
51273991 |
T |
|
| Q |
328 |
cttccactccctccaccgccgggaaccggtcacaataaacgtgaccg-gtacccgaaggccttgtttgtgaaccttattatagcatcggagaaagcacaa |
426 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
51273992 |
cttccactccctccaccgccgggaaccggtcacaataaacgtgaccgtgtactagaaggctttgtttgtgaaccttattatagcatcggagaaagcacaa |
51274091 |
T |
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| Q |
427 |
agaaagtatctttcaaccatcacaggttc |
455 |
Q |
| |
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| T |
51274092 |
agaaagtatctttcaaccatcacaggttc |
51274120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 48403187 - 48403146
Alignment:
| Q |
62 |
agaaaaaatggcacttcaattttatctcaaagcgtaaacttc |
103 |
Q |
| |
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||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
48403187 |
agaaagaatggcacttcaattttatctcaaagtgtaaacttc |
48403146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 153; Significance: 7e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 104 - 400
Target Start/End: Original strand, 14907797 - 14908094
Alignment:
| Q |
104 |
tcatttcgttctcaccaaatcttaatctttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatcctaaacttgacaatataac |
203 |
Q |
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|||||||||||||||| ||||| |||||||||||||||||||| ||||||| ||| |||||||| ||||||||||||| |||||||| ||||||||||| |
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| T |
14907797 |
tcatttcgttctcacccaatctcaatctttctactcctgaaaaccaaatttacttgagttttctttgccgaaaattcgaccctaaactcgacaatataac |
14907896 |
T |
|
| Q |
204 |
aagnnnnnnncatgtcttatattcgagaattgtcggattttcaaatggcttgtttctctgcaagaaaaccacacgtggtagagtctaccatgtatgcaac |
303 |
Q |
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||| |||||||||||||||||||||| |||| ||| |||||||||||||| |||||||||||||||||| |||||||||||||||| |||||| |
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| T |
14907897 |
aagaaaataaaatgtcttatattcgagaattgttggatcttccaatggcttgtttctgtgcaagaaaaccacacgtagtagagtctaccatgtctgcaac |
14907996 |
T |
|
| Q |
304 |
atcctcacaaaagattggatcaaacttccactccctccaccgccgggaaccggtcacaataaacgtgaccg-gtacccgaaggccttgtttgtgaacc |
400 |
Q |
| |
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||||||||||||||| |||||||| |||||||||||||||||| ||||| |||| ||| | |||||||| |||| |||||| ||||||| ||||| |
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| T |
14907997 |
atcctcacaaaagataggatcaaatttccactccctccaccgctacgaaccagtcataatgagcgtgaccgtgtacatgaaggctttgtttgcgaacc |
14908094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 28 - 246
Target Start/End: Complemental strand, 5051674 - 5051458
Alignment:
| Q |
28 |
actttgctccaacaaatgaaagaacaagaaaaccagaaaaaatggcacttcaattttatctcaaagcgtaaacttctcatttcgttctcaccaaatctta |
127 |
Q |
| |
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|||||| ||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||| ||| | | ||||||| | ||||| |
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| T |
5051674 |
actttggtccaacaaatgaaagaagaagaaaaccagaaaag-tagcacttcaattttatctcaaagcgtaaactcctcgtatggttctcatccaatctcc |
5051576 |
T |
|
| Q |
128 |
atctttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatcctaaacttgacaatataacaagnnnnnnncatgtcttatattc |
227 |
Q |
| |
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||||||||||||||| ||| |||||||| | | ||||||| ||| |||||||||| |||||||| |||||||||||||| ||| ||||||||| |
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| T |
5051575 |
atctttctactcctgcaaaccaaatttcctagagttttctgggctgaaaattcgaccctaaactcgacaatataacaagataaaatcat-ccttatattc |
5051477 |
T |
|
| Q |
228 |
gagaattgtcggattttca |
246 |
Q |
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||||||||| ||||||||| |
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| T |
5051476 |
gagaattgttggattttca |
5051458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 302 - 455
Target Start/End: Complemental strand, 5051458 - 5051299
Alignment:
| Q |
302 |
acatcctcacaaaagattggatcaaacttccactccctccaccgccgggaaccggtca-caataaacgtgaccg-gtacccgaaggccttgtttgtgaac |
399 |
Q |
| |
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|||||||| | |||||||||||||||||||||||||||||| || || ||||||||| |||||||||||||| |||| ||||||| | ||||| |||| |
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| T |
5051458 |
acatcctcgcgaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgaccgtgtactcgaaggcttcgtttgcgaac |
5051359 |
T |
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| Q |
400 |
ctta-----ttatagcatcggagaaagcacaaagaaagtatctttcaaccatcacaggttc |
455 |
Q |
| |
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|||| ||||||||| | | || |||||| ||||||||||||||||||||||||||| |
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|
| T |
5051358 |
cttattattttatagcattgatggaaacacaaa-aaagtatctttcaaccatcacaggttc |
5051299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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