View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10523_5 (Length: 474)
Name: NF10523_5
Description: NF10523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10523_5 |
 | |
|
| [»] chr4 (6 HSPs) |
| |
|
| [»] scaffold0685 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 179; Significance: 2e-96; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 224 - 474
Target Start/End: Original strand, 29560939 - 29561189
Alignment:
| Q |
224 |
atgatctatagaaacaattaatttacaacttattcataagaacttatatgatgagagcttatcattaaactcttcaataagttatttatccaaacacacc |
323 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29560939 |
atgaactatagaaacaattaattcccaacttattcataagaacttatatgatgagagcttaccattaaactcttaaataagttatttatccaaacacacc |
29561038 |
T |
|
| Q |
324 |
ctaaatatcaagccagcatgcacaatacgcttttatcttcctttgagaatgctggccttatttctctaagcatagtacatattacatgacagatcccaaa |
423 |
Q |
| |
|
||||||||||||||||||| || |||| |||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
29561039 |
ctaaatatcaagccagcatacagcatacacttttatcttcctttgaggatgctgaccttatttctctaagcatggtacatattacatgacagatatcaaa |
29561138 |
T |
|
| Q |
424 |
ccaccaatcttaaaacatgaaacacctaaatcattgcgtgcctccttcgcc |
474 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||| |||||| ||||||| |
|
|
| T |
29561139 |
ccaccaatcttaaaacaagaaacacataaatcattgtgtgccttcttcgcc |
29561189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 11 - 182
Target Start/End: Original strand, 29560769 - 29560941
Alignment:
| Q |
11 |
atcatgttttggtttcagaaactctgcagaaggatgagttatttattaatgtgaa-taatgttgggtattgtgttaaaccaagccgttgtcattttgtga |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
29560769 |
atcatgttttggtttcagaaactctgcagaaggatgagttatttattaatgtgaaataatgttgggtattgtgttaaaccaagccgttttcattttgcga |
29560868 |
T |
|
| Q |
110 |
aataaggtctagcttattgcataaatatttatgcaagtgttcgaaagagtttataaaaatagtttatgatatg |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
29560869 |
aataaggtctagcttattgcataaatatttacgcaagtgttctaaagagtttataaaaatagtttatgatatg |
29560941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 29556988 - 29557069
Alignment:
| Q |
172 |
tttatgatatgtttataagttgttttcatcctattttcgtaagtcgctctaaatgatctatagaaacaattaatttacaact |
253 |
Q |
| |
|
|||||||||||| || |||||||||||||| ||||||| ||||| ||||||||| | |||||||||||||| ||||| |||| |
|
|
| T |
29556988 |
tttatgatatgtgtagaagttgttttcatcttattttcataagttgctctaaataacctatagaaacaatttatttataact |
29557069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 29550446 - 29550500
Alignment:
| Q |
11 |
atcatgttttggtttcagaaactctgcagaaggatgagttatttattaatgtgaa |
65 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
29550446 |
atcacgttttggtttcagaaactctgcataaggatgagttatttatcaatgtgaa |
29550500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 253 - 342
Target Start/End: Original strand, 29557115 - 29557204
Alignment:
| Q |
253 |
ttattcataagaacttatatgatgagagcttatcattaaactcttcaataagttatttatccaaacacaccctaaatatcaagccagcat |
342 |
Q |
| |
|
|||||||||| |||||||||||| ||| |||| |||||| ||||||| | | ||||||||||||||||||| | ||||||| ||||||| |
|
|
| T |
29557115 |
ttattcataacaacttatatgataagaacttaacattaagctcttcactgaattatttatccaaacacaccatgaatatcatcccagcat |
29557204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 440
Target Start/End: Original strand, 29557326 - 29557363
Alignment:
| Q |
403 |
tattacatgacagatcccaaaccaccaatcttaaaaca |
440 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
29557326 |
tattacatgacagatcccaaactaccaatcttataaca |
29557363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0685 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0685
Description:
Target: scaffold0685; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 6119 - 6173
Alignment:
| Q |
11 |
atcatgttttggtttcagaaactctgcagaaggatgagttatttattaatgtgaa |
65 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
6119 |
atcacgttttggtttcagaaactctgcataaggatgagttatttatcaatgtgaa |
6173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 4576891 - 4576836
Alignment:
| Q |
160 |
ttataaaaatagtttatgatatgtttataagttgttttcatcctattttcgtaagt |
215 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||| |||| | ||||||| ||||| |
|
|
| T |
4576891 |
ttatgaaaatagtttatgacatgtttataagttgtgttcagcttattttcataagt |
4576836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 25277998 - 25278052
Alignment:
| Q |
122 |
cttattgcataaatatttatgcaagtgttcgaaagagtttataaaaatagtttat |
176 |
Q |
| |
|
||||| ||||||| | ||||||||||||| ||||||| |||||||||||| |||| |
|
|
| T |
25277998 |
cttatggcataaacaattatgcaagtgtttgaaagagcttataaaaataggttat |
25278052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 11707141 - 11707092
Alignment:
| Q |
160 |
ttataaaaatagtttatgatatgtttataagttgttttcatcctattttc |
209 |
Q |
| |
|
|||| ||||||| |||||| |||||||||||||||||||| | ||||||| |
|
|
| T |
11707141 |
ttatcaaaatagattatgacatgtttataagttgttttcagcttattttc |
11707092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 34383015 - 34382974
Alignment:
| Q |
173 |
ttatgatatgtttataagttgttttcatcctattttcgtaag |
214 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||| |||| |
|
|
| T |
34383015 |
ttatgatatgtctataagttgttttcatcttattttcttaag |
34382974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University