View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10523_6 (Length: 437)
Name: NF10523_6
Description: NF10523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10523_6 |
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| [»] chr2 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 33167215 - 33167278
Alignment:
| Q |
12 |
gaatatgacacgactctttgttgctgcaacactgcacatataacattaataagaccaatgtacc |
75 |
Q |
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| T |
33167215 |
gaatatgacaggactctttgttgctgcaacactgcacacatagcattaataagaccaatgtacc |
33167278 |
T |
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Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 33115510 - 33115556
Alignment:
| Q |
24 |
actctttgttgctgcaacactgcacatataacattaataagaccaat |
70 |
Q |
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| T |
33115510 |
actctttgttgctgcaacactgcacatataacattaataagaccaat |
33115556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 393 - 437
Target Start/End: Original strand, 33115690 - 33115734
Alignment:
| Q |
393 |
acttacgcgctaagagaaccaccacccttggcatggccatccatt |
437 |
Q |
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| T |
33115690 |
acttacgcgctaagagaaccaccacccatggcatagccatccatt |
33115734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 385 - 437
Target Start/End: Complemental strand, 44826686 - 44826634
Alignment:
| Q |
385 |
gtagtaagacttacgcgctaagagaaccaccacccttggcatggccatccatt |
437 |
Q |
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| T |
44826686 |
gtagtaacacttacgcgctaagagaaccaccacccttggcatggccatccatt |
44826634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 44827204 - 44827137
Alignment:
| Q |
12 |
gaatatgacacgactctttgttgctgcaacactgcacatataacattaataagaccaatgtacccaaagca |
82 |
Q |
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| T |
44827204 |
gaatatgacaggactctttgttgctgcaacactgcacatataaaattaataag---aatgtacccaaagca |
44827137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 292 - 339
Target Start/End: Complemental strand, 44828941 - 44828894
Alignment:
| Q |
292 |
actaattttccaaattctttcaaataaaacaaatatattttccatata |
339 |
Q |
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| T |
44828941 |
actaattttccaaattctttcaaataatacaaatatattttccatata |
44828894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 437
Target Start/End: Original strand, 2203427 - 2203477
Alignment:
| Q |
387 |
agtaagacttacgcgctaagagaaccaccacccttggcatggccatccatt |
437 |
Q |
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| T |
2203427 |
agtaatacttacgcactaagtgcaccaccaccctttgcatggccatccatt |
2203477 |
T |
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