View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10523_8 (Length: 363)
Name: NF10523_8
Description: NF10523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10523_8 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 31 - 310
Target Start/End: Complemental strand, 9564983 - 9564707
Alignment:
| Q |
31 |
aaatgatttagttgaaatatccatcctatgtacatatgcatgtaannnnnnnngggtgacctacatgtattatatcaatctacaatttctaattaaccaa |
130 |
Q |
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| T |
9564983 |
aaatgatttagttgaaatatccatcctatgtacatatgcgtgtaatttttttttggtgacctacatgtattatatcaatctacaatttctgatgaaccag |
9564884 |
T |
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| Q |
131 |
tttattattgtatacattattacgtaaaaaacacaaatttctgtataagataaaattcctaattaataaataagttacgtcaaagatgnnnnnnnnnnnn |
230 |
Q |
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| T |
9564883 |
tttattattgtatacattattacgtaaaaaacacaaatttctgtataagataaaattcctaattaataaataagttacgtcaaagatg---aaaaaaaaa |
9564787 |
T |
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| Q |
231 |
nnnnggaaaagtaaattttatcatacatttttaataagaatagattggctcctaaataaaagaataagaatgaagtacca |
310 |
Q |
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| T |
9564786 |
aaaaggaaaagtaaattttatcatacatttttaataagaatagattgggtcctaaataaaagaataagaatgaagtacca |
9564707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 31 - 218
Target Start/End: Complemental strand, 9573858 - 9573671
Alignment:
| Q |
31 |
aaatgatttagttgaaatatccatcctatgtacatatgcatgtaannnnnnnngggtgacctacatgtattatatcaatctacaatttctaattaaccaa |
130 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9573858 |
aaatgatttagttgaaatatacatcctatgtacatatgcatgtaattttttttgggtgacctacatgtattatatcaatctacaatttctaattaaccag |
9573759 |
T |
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| Q |
131 |
tttattattgtatacattattacgtaaaaaacacaaatttctgtataagataaaattcctaattaataaataagttacgtcaaagatg |
218 |
Q |
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|||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9573758 |
tttattatcgtatacattattgcgtaaaaaacacaaatatctgtataagataaaattcctaattaataaataagttacgtcaaagatg |
9573671 |
T |
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