View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10523_low_1 (Length: 236)
Name: NF10523_low_1
Description: NF10523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10523_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 56231374 - 56231155
Alignment:
| Q |
1 |
gtccattatggagttgaacactagtatcaaaatctctatctatggtacttgcagcaacagttaatatccaaggtgcaacatttgaaacagttccaggtgt |
100 |
Q |
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| T |
56231374 |
gtccattatggagttgaacactagcatcaaaatctctatctatggtacttgcagcaacagttaatatccaaggtgcaacatttgaaacagttccaggtgt |
56231275 |
T |
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| Q |
101 |
tggtcctgaatttccagctgaacacaacacagtgatgccttccttaactgcgtgaaatgcagcgattgaaaggccatcatcaaagtaatcagaagcatca |
200 |
Q |
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| T |
56231274 |
tggtcctgaatttccagctgaacacaacacagtgatgccttccttaactgcgtgaaatgcagcgattgaaaggccatcatcaaagtaatcagaagcatca |
56231175 |
T |
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| Q |
201 |
cctccaagagaaagggaaag |
220 |
Q |
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| T |
56231174 |
ccaccaagagaaagggaaag |
56231155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 39189100 - 39188881
Alignment:
| Q |
1 |
gtccattatggagttgaacactagtatcaaaatctctatctatggtacttgcagcaacagttaatatccaaggtgcaacatttgaaacagttccaggtgt |
100 |
Q |
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|||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
39189100 |
gtccattatggagttgaacaacagtatcaaactctctatctaaggtacttgcagcaacagttaatatccaaggtgcaacatttgaaacagttccaaatgt |
39189001 |
T |
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| Q |
101 |
tggtcctgaatttccagctgaacacaacacagtgatgccttccttaactgcgtgaaatgcagcgattgaaaggccatcatcaaagtaatcagaagcatca |
200 |
Q |
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| T |
39189000 |
tggtccagaatttccagctgaacacaacacagtgatgcctttcttaacagcatgaaatgcagcaattgaaagagcatcatcaaagtaatcaacagcagga |
39188901 |
T |
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| Q |
201 |
cctccaagagaaagggaaag |
220 |
Q |
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| T |
39188900 |
cttccaagagatatggaaag |
39188881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 106
Target Start/End: Original strand, 31050907 - 31050980
Alignment:
| Q |
33 |
tctctatctatggtacttgcagcaacagttaatatccaaggtgcaacatttgaaacagttccaggtgttggtcc |
106 |
Q |
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|||||||| || ||||| ||||||||||| || | |||||| |||||||| | |||| ||||||| |||||||| |
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| T |
31050907 |
tctctatcaattgtactagcagcaacagtgaacacccaaggagcaacattagtaacacttccaggggttggtcc |
31050980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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