View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10523_low_2 (Length: 227)
Name: NF10523_low_2
Description: NF10523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10523_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 54179773 - 54179992
Alignment:
| Q |
1 |
tgctaagaatagttaccatttgtaatctcttctcattgcttcaattcttccaaggattcccttaacagctacatcaaacgcatcttcaagtgtttctaat |
100 |
Q |
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| T |
54179773 |
tgctaagaatagttaccatttgtaatctcttctcattgcttcaattcttccaaggattcccttaacagctacatcaaacgcatcttcaagtgtttctaat |
54179872 |
T |
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| Q |
101 |
ctagaacttggataacgataaacaattcttggaattagacttataacctcatttctcatagcaaacacttccctttttgaaaaattaagcaatgtctcat |
200 |
Q |
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| T |
54179873 |
ctagaacttggataacgatacacaattcttggaattagacttataacctcatttctcatagcaaacacttccctttttgaaaaattaagcaatgtctcat |
54179972 |
T |
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| Q |
201 |
tgatcattaccttcttctct |
220 |
Q |
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|||||||||||||||||||| |
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| T |
54179973 |
tgatcattaccttcttctct |
54179992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 28 - 207
Target Start/End: Complemental strand, 41948852 - 41948673
Alignment:
| Q |
28 |
tcttctcattgcttcaattcttccaaggattcccttaacagctacatcaaacgcatcttcaagtgtttctaatctagaacttggataacgataaacaatt |
127 |
Q |
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| T |
41948852 |
tcttctcattgcttcaattcttccaagaactcccttaacagctatatcaaaagcatcttcaattgtctctaatctagaacctggataacgatacacaatc |
41948753 |
T |
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| Q |
128 |
cttggaattagacttataacctcatttctcatagcaaacacttccctttttgaaaaattaagcaatgtctcattgatcat |
207 |
Q |
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| T |
41948752 |
ctcggaatgagtcttataacctcttctctcattgccaacacttcactttttgaaacattgaacaatgtctcattaatcat |
41948673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 28 - 207
Target Start/End: Complemental strand, 41943338 - 41943159
Alignment:
| Q |
28 |
tcttctcattgcttcaattcttccaaggattcccttaacagctacatcaaacgcatcttcaagtgtttctaatctagaacttggataacgataaacaatt |
127 |
Q |
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||||||||||||||||||||||||||| | |||||||||||||| |||||| |||||||||| ||| ||||||||||||| |||||||||||| ||||| |
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| T |
41943338 |
tcttctcattgcttcaattcttccaagaactcccttaacagctatatcaaaagcatcttcaattgtctctaatctagaacctggataacgatacacaatc |
41943239 |
T |
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| Q |
128 |
cttggaattagacttataacctcatttctcatagcaaacacttccctttttgaaaaattaagcaatgtctcattgatcat |
207 |
Q |
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| T |
41943238 |
ctcggaatgagtcttataacttcttctctcattgccaacacttcactttttgaaacattgaacaatgtctcattaatcat |
41943159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 33 - 207
Target Start/End: Complemental strand, 22795338 - 22795164
Alignment:
| Q |
33 |
tcattgcttcaattcttccaaggattcccttaacagctacatcaaacgcatcttcaagtgtttctaatctagaacttggataacgataaacaattcttgg |
132 |
Q |
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||||| ||||||||||| ||| | ||||||||||||||||||||| ||||| |||||||| || || ||||||||||||||||| || ||||| | || |
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| T |
22795338 |
tcatttcttcaattctttgaagaactcccttaacagctacatcaaatgcatcatcaagtgtctccaacctagaacttggataacggtatacaatcttcgg |
22795239 |
T |
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| Q |
133 |
aattagacttataacctcatttctcatagcaaacacttccctttttgaaaaattaagcaatgtctcattgatcat |
207 |
Q |
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| T |
22795238 |
aattaatcttatgacctcatctctcatttccaacacttcgctttcttgtacattaaacaatgtctcattgatcat |
22795164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 28 - 207
Target Start/End: Complemental strand, 1211605 - 1211426
Alignment:
| Q |
28 |
tcttctcattgcttcaattcttccaaggattcccttaacagctacatcaaacgcatcttcaagtgtttctaatctagaacttggataacgataaacaatt |
127 |
Q |
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||||||||||||||||||||||||||| | |||||||||||||| |||||| |||||||||| ||| ||||||||||| | |||||||||||| ||||| |
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| T |
1211605 |
tcttctcattgcttcaattcttccaagaactcccttaacagctatatcaaaagcatcttcaattgtctctaatctagatcctggataacgatacacaatc |
1211506 |
T |
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| Q |
128 |
cttggaattagacttataacctcatttctcatagcaaacacttccctttttgaaaaattaagcaatgtctcattgatcat |
207 |
Q |
| |
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|| ||||| || ||||||||||| | |||||| || |||||||| |||||||||| ||| | ||||||||||| ||||| |
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| T |
1211505 |
ctcggaatgagtcttataacctcttctctcattgccaacacttcactttttgaaacattgaaaaatgtctcattaatcat |
1211426 |
T |
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