View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10524_1 (Length: 880)
Name: NF10524_1
Description: NF10524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10524_1 |
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Alignment Details
Target: chr2 (Bit Score: 753; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 753; E-Value: 0
Query Start/End: Original strand, 13 - 857
Target Start/End: Original strand, 1885288 - 1886129
Alignment:
| Q |
13 |
agaacctgtgatgatggactttatagagctattgattcctatcttaaggtaattactttctgtttctaggatttgcttatttacctttggcttttcaatg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1885288 |
agaacctgtgatgatggactttatagagctattgattcctatcttaaggtaattactttctgtttctaggatttgcttatttacctttggcttttcaatg |
1885387 |
T |
|
| Q |
113 |
gttttatgtcatctagagttacacatttggtttggtnnnnnnnntggttgaccttattttaagtagataaatatacatagaaggttaactcattgtcaca |
212 |
Q |
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| T |
1885388 |
gttttatgtcatctagagttacacatttggtttggtaaaaaaaatggttgatcttattttaagtagataaatatacatagaaagttaactcatagtcaca |
1885487 |
T |
|
| Q |
213 |
taatttactacggccaaacgtgaattggtttgcgagtagcaatttgcagtactttttcaaattgggtcgcacttaatatccattatatggaagtcgagtg |
312 |
Q |
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| T |
1885488 |
taatttactgcggccaaacgtgaattggtttgcgagtagcaatttgcagtactttttcaaattggttcgcacttaatatccattatatggaaat-gagt- |
1885585 |
T |
|
| Q |
313 |
agatgagaagcaaagggtgaaataccaatttgcctttgcaattgtagagattggacaatttagtttttgaaatttgatggaatttcaaaataattcttga |
412 |
Q |
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| T |
1885586 |
agatgaaaagcaaagagtgaaataccaatttgcctttgcaattgtagagatcggacaatttagtttttgaaatttgatggaatttcaaaataattcttga |
1885685 |
T |
|
| Q |
413 |
aattgggagattctcgatgaaattaatttctgttgaataattttagtaactaaattgaccgactcaaaaggaataatgtggtcgaggattctcaattcaa |
512 |
Q |
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| T |
1885686 |
aattgg-agattctcgatgaaattaatttctgttgagtaattttagtaactaaattgaccgactcaaaaggaataatgtggtcgaggattctcaattcaa |
1885784 |
T |
|
| Q |
513 |
agactattttatagactaagttgacaatatcgtattattttagggacaactttggtgattcactcaaatattaggatcaaaagtatattgatgatgaatg |
612 |
Q |
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| T |
1885785 |
agactattttatagactaagttgacaatatcgtattattttagggacaactttggtgattcactcaaatattaggatcaaaagtatattgatgatgaatg |
1885884 |
T |
|
| Q |
613 |
tatggtagctcagcttaaattttattacattagatttctgctgctagatttcttatcagtgaagtaaactaacaggcacatccaacactttctgagcatg |
712 |
Q |
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| T |
1885885 |
tatggtagctcagcttaaattttattacattagatttctgctgctggatttcttatcagtgaagtaaactaacaggcacatccaacactttctgagcatg |
1885984 |
T |
|
| Q |
713 |
aaaggaagcgactctgccgcgtaatggattgccagaaactctcaattgatgcatgcatgcatgctgcacaaaatgaaaggcttccattgagggtagttgt |
812 |
Q |
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| T |
1885985 |
aaaggaagcgactctgccgcgtaatggattgccagaaactctcaattgatgcatgcatgcatgctgcacaaaatgaaaggcttccattgagggtagttgt |
1886084 |
T |
|
| Q |
813 |
gcaagtcctatttgcagaacaggtaaagataagtactgcactatc |
857 |
Q |
| |
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| T |
1886085 |
gcaagtcctatttgcagaacaggtaaagataagtactgcactatc |
1886129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 682 - 855
Target Start/End: Complemental strand, 37213453 - 37213280
Alignment:
| Q |
682 |
taacaggcacatccaacactttctgagcatgaaaggaagcgactctgccgcgtaatggattgccagaaactctcaattgatgcatgcatgcatgctgcac |
781 |
Q |
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| T |
37213453 |
taacaggcacatccaacactaactgagcacgaaaggaagcgtctctgccgtgtaatggattgtcaaaaactctccattgacgcctgcatgcacgcagctc |
37213354 |
T |
|
| Q |
782 |
aaaatgaaaggcttccattgagggtagttgtgcaagtcctatttgcagaacaggtaaagataagtactgcacta |
855 |
Q |
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| T |
37213353 |
aaaacgaacgactgccattaagggtagtagtgcaagttttattctctgagcaagtaaagataagcaatgcacta |
37213280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 748 - 788
Target Start/End: Original strand, 37860873 - 37860913
Alignment:
| Q |
748 |
aaactctcaattgatgcatgcatgcatgctgcacaaaatga |
788 |
Q |
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| T |
37860873 |
aaactctcacttgatgcatgcatacatgctgcacaaaatga |
37860913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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