View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10524_10 (Length: 473)
Name: NF10524_10
Description: NF10524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10524_10 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 32 - 451
Target Start/End: Original strand, 38123372 - 38123781
Alignment:
| Q |
32 |
ttagtggtaagagtttaactttttaatcttatacaagacaattgtaaaatggtcattagcgttgtgtcttattaataatagttttcccttccacaacttc |
131 |
Q |
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| T |
38123372 |
ttagtggtaagagtttaactttttaattttatacaagacaattgtaaaatggtcattagcgttgcgtcttattaataatagttttcccttccacaacttc |
38123471 |
T |
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| Q |
132 |
tataaagttaccttggattgagtatggcaaaagacgcgaaaagaagaggttggagaaacgttgatggtggtgatgaagttggtgcgagcaaagaagagag |
231 |
Q |
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| T |
38123472 |
tataaagttaccttggattgagtatggcaaaagacgcgaaaagaagaggttggagaaatgttgatggtggtggtgaagttggtgcgagcaaagaagagag |
38123571 |
T |
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| Q |
232 |
gaagtgaatggatggaagaagcatagttgtagttagaggaggtgataggaattcccgccattggaatttggcagaagaagaagagataatggaatggaat |
331 |
Q |
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| T |
38123572 |
gaagtgaatggatggaagaagcatagttgtagttagaggaggtgataggaattcccgccattggaatttggcagaagaagaagagat-----aatggaat |
38123666 |
T |
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| Q |
332 |
ggaatgaatgcagagaacgtaagagatattattgttaatatgaacggaacaagtagtagtgagaatgagaaaagtagtttggtccaactgatatttatgt |
431 |
Q |
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| T |
38123667 |
ggaatgaatgcagagaacgtaagagatattattgttaatat-----gaacaagtagtagcgagaatgagaaaagtagtttggtccaacttatatttatgt |
38123761 |
T |
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| Q |
432 |
cagtttttggtgcatgatga |
451 |
Q |
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| T |
38123762 |
cagtttttggtgcatgatga |
38123781 |
T |
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