View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10524_11 (Length: 468)

Name: NF10524_11
Description: NF10524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10524_11
NF10524_11
[»] chr1 (3 HSPs)
chr1 (8-448)||(37871762-37872202)
chr1 (150-445)||(37923585-37923881)
chr1 (322-445)||(36526247-36526370)
[»] scaffold0305 (1 HSPs)
scaffold0305 (33-369)||(18684-19013)
[»] chr7 (4 HSPs)
chr7 (176-389)||(28283781-28283995)
chr7 (310-366)||(29443729-29443784)
chr7 (347-391)||(5460931-5460975)
chr7 (349-390)||(38195640-38195681)
[»] chr2 (6 HSPs)
chr2 (16-391)||(37490585-37490962)
chr2 (142-404)||(9252254-9252516)
chr2 (84-199)||(13019143-13019258)
chr2 (326-388)||(13018965-13019027)
chr2 (49-197)||(10785867-10786015)
chr2 (62-196)||(37262601-37262736)
[»] chr5 (4 HSPs)
chr5 (162-445)||(23269893-23270176)
chr5 (339-435)||(14964980-14965076)
chr5 (348-397)||(26917408-26917457)
chr5 (49-109)||(4430513-4430573)
[»] chr8 (2 HSPs)
chr8 (322-391)||(29468372-29468441)
chr8 (29-112)||(36010227-36010310)
[»] chr4 (1 HSPs)
chr4 (349-390)||(47813892-47813933)
[»] chr3 (1 HSPs)
chr3 (346-390)||(43059104-43059148)


Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 8 - 448
Target Start/End: Original strand, 37871762 - 37872202
Alignment:
Q  8 ggaaggatggtctagaccgtcagtgggagcagtaaaatgctatgttgatgcaacaaatttcaaggagcaagtatgttatggggtcagcatgtgtcttaga 107  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  37871762 ggaaggatggtctagaccgtcagtgggagcagtaaaatgccatgttgatgcggcaaatttcaaggagcaagtatgttatggggtcagcatgtgtcttaga 37871861  T
Q  108 ggggatcaatgggagtatattagggagaagaaatcttggtttaaaggcctcccacaacccaacaaggtggaagcaagaggtttaaaagaagcaacaatct 207  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37871862 ggggatcaaggggagtacattagggagaagaaatcttggtttaaaggcctcccacaacccaacaaggtggaagcaagaggtttaaaagaagcgacaatct 37871961  T
Q  208 gacttggtaaattaaggtttccttcggtgtccattgaaattgatcgtaagcaagtggtttatgacatctctagcaatctcaacatcaattccatgctcgt 307  Q
    ||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  37871962 gacttggtaaattaaggtttccttctgtgtccatcgaaattgattgtaagcaagtggtttacgacatctctagcaatctcaacatcaattccatgctcgt 37872061  T
Q  308 ggtattctgattggttgcaaagcttcacttctgaatcatcaaaactttaagataagtttcatcaggagacaaacaaataatgtttcccatttattagtca 407  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||    
T  37872062 ggtattctgattggttgcaaagcttcacttctgaataatcaaaactttaagataagttttattaggagacaaacaaataatgtttcccacttattagtca 37872161  T
Q  408 gagtggcgttatcttatggtagttccaaagttcatgatgat 448  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  37872162 gagttgcgttatcttatggtagttccaaagttcatgatgat 37872202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 150 - 445
Target Start/End: Complemental strand, 37923881 - 37923585
Alignment:
Q  150 aaaggcctcccacaacccaacaaggtggaagcaagaggtttaaaagaagcaacaatctgacttggtaaattaaggtttccttcggtgtccattgaaattg 249  Q
    ||||| ||||||||||||||  | |  |||||||||||| |||||||||| | ||  || |||||||  || ||||||||||||||||| || ||| |||    
T  37923881 aaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataaaatggcttggtaccttgaggtttccttcggtgtctatagaacttg 37923782  T
Q  250 atcgtaagcaagtggtttatgacatctctagcaatctcaacatcaattccatgctcgtggta-ttctgattggttgcaaagcttcacttctgaatcatca 348  Q
    || | |||||||||||| ||| |||||| |||||||||| || |||||||||| |||  | | |||||| |  |||||||| ||||||| ||||||||||    
T  37923781 attgcaagcaagtggttgatggcatctcaagcaatctcagcaccaattccatgttcggcgcaattctgaatacttgcaaagtttcacttatgaatcatca 37923682  T
Q  349 aaactttaagataagtttcatcaggagacaaacaaataatgtttcccatttattagtcagagtggcgttatcttatggtagttccaaagttcatgat 445  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||| || ||||| || | | | |||||||||| ||||||| ||| |||||||    
T  37923681 aaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttagttagggcgtcattatcttatgctagttcccaagatcatgat 37923585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 322 - 445
Target Start/End: Complemental strand, 36526370 - 36526247
Alignment:
Q  322 ttgcaaagcttcacttctgaatcatcaaaactttaagataagtttcatcaggagacaaacaaataatgtttcccatttattagtcagagtggcgttatct 421  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| || ||||   | | | | ||||||    
T  36526370 ttgcaaaacttcacttatgaatcatcaaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttagctcgggcgtcattatct 36526271  T
Q  422 tatggtagttccaaagttcatgat 445  Q
    |||| |||||||  ||||||||||    
T  36526270 tatgctagttcccgagttcatgat 36526247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0305 (Bit Score: 116; Significance: 8e-59; HSPs: 1)
Name: scaffold0305
Description:

Target: scaffold0305; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 33 - 369
Target Start/End: Complemental strand, 19013 - 18684
Alignment:
Q  33 ggagcagtaaaatgctatgttgatgcaacaaatttcaaggagcaagtatgttatggggtcagcatgtgtcttagaggggatcaatgggagtatattagg- 131  Q
    ||||||||||||||  |||| ||| |||||| ||| |||||| ||| ||||| | |||||  |||||||||||||||||||||| ||||||| ||| ||     
T  19013 ggagcagtaaaatggaatgtcgatacaacaatttt-aaggagtaaggatgttgttgggtcgacatgtgtcttagaggggatcaaggggagtacattggga 18915  T
Q  132 gagaagaaatcttggtttaaaggcctcccacaacccaacaaggtggaagcaagaggtttaaaagaagcaacaatctgacttggtaaattaaggtttcctt 231  Q
    | ||||| | ||||||||||||| ||||||||||||||  ||| | ||||||||||||||||||||||        | |||||||| ||||||||||| |    
T  18914 gcgaagacaacttggtttaaaggtctcccacaacccaatgaggcgtaagcaagaggtttaaaagaagcg-------ggcttggtaatttaaggtttccgt 18822  T
Q  232 cggtgtccattgaaattgatcgtaagcaagtggtttatgacatctctagcaatctcaacatcaattccatgctcgtggtattctgattggttgcaaagct 331  Q
    ||||||| |||||| ||||| |||| ||||||||| | ||||| ||||| |||||||||| |||||||| | |  || |||| ||| |||||||||||||    
T  18821 cggtgtctattgaacttgattgtaaacaagtggttgacgacatatctagaaatctcaacaccaattccacgtttatgctattttgaatggttgcaaagct 18722  T
Q  332 tcacttctgaatcatcaaaactttaagataagtttcat 369  Q
    |||||||||||||||||||| || |||| |||||||||    
T  18721 tcacttctgaatcatcaaaatttgaagacaagtttcat 18684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 3e-46; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 176 - 389
Target Start/End: Original strand, 28283781 - 28283995
Alignment:
Q  176 ggaagcaagaggtttaaaagaagcaacaatctgacttggtaaattaaggtttccttcggtgtccattgaaattgatcgtaagcaagtggtttatgacatc 275  Q
    ||||||||| | |||||||||||||| ||  || ||| |||| || ||||||||||| ||||| |||||| |||||||||||||||||  | ||||||||    
T  28283781 ggaagcaagggttttaaaagaagcaataaattggcttagtaatttgaggtttccttctgtgtctattgaacttgatcgtaagcaagtgcctgatgacatc 28283880  T
Q  276 tctagcaatctcaacatcaattccatgctcgtgg-tattctgattggttgcaaagcttcacttctgaatcatcaaaactttaagataagtttcatcagga 374  Q
    ||||||||||||||||   |||| ||| ||     |||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28283881 tctagcaatctcaacactgattctatgttcaacactattctgaatggctgctaagcttcacttctgaatcatcaaaactttaagataagtttcattagga 28283980  T
Q  375 gacaaacaaataatg 389  Q
    |||||||||||||||    
T  28283981 gacaaacaaataatg 28283995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 366
Target Start/End: Original strand, 29443729 - 29443784
Alignment:
Q  310 tattctgattggttgcaaagcttcacttctgaatcatcaaaactttaagataagttt 366  Q
    |||||| | |||||||| |||||| ||||||||||||||||||||||||||||||||    
T  29443729 tattctaaatggttgcagagcttc-cttctgaatcatcaaaactttaagataagttt 29443784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 391
Target Start/End: Original strand, 5460931 - 5460975
Alignment:
Q  347 caaaactttaagataagtttcatcaggagacaaacaaataatgtt 391  Q
    ||||||||||||||||||||||| ||||||||| |||||| ||||    
T  5460931 caaaactttaagataagtttcattaggagacaagcaaatattgtt 5460975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 390
Target Start/End: Complemental strand, 38195681 - 38195640
Alignment:
Q  349 aaactttaagataagtttcatcaggagacaaacaaataatgt 390  Q
    |||||||||||||||||||||| |||||||| ||||| ||||    
T  38195681 aaactttaagataagtttcatctggagacaagcaaattatgt 38195640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 4e-45; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 16 - 391
Target Start/End: Original strand, 37490585 - 37490962
Alignment:
Q  16 ggtctagaccgtcagtgggagcagtaaaatgctatgttgatgcaacaaatttcaaggagcaagtatgttatggggtcagcatgtgtcttagaggggatca 115  Q
    |||||||||  |||| |||||||| ||||||| || | ||||| |||| ||| || ||| ||| |||||||||| ||| |||| ||||||| |  ||||     
T  37490585 ggtctagacgatcagagggagcagcaaaatgcaatatagatgcgacaatttttaaagagtaaggatgttatgggatcaacatgggtcttagcgatgatcg 37490684  T
Q  116 atgggagtatattagggagaagaaatcttggtttaaaggcctcccacaacccaacaaggtggaagcaagaggtttaaaagaagcaacaatctgacttggt 215  Q
    | ||||||| ||| | | ||||| | ||| |||||||||||| |||||| |||||  || |||||||| ||||||||||||||| | ||  || ||||||    
T  37490685 aggggagtacattggagcgaagacaacttcgtttaaaggccttccacaatccaacgtggaggaagcaaaaggtttaaaagaagcgataaattgtcttggt 37490784  T
Q  216 aaattaaggtttccttcggtgtccattgaaattgatcgtaagcaagtggtttatgacatctctagcaatctcaacatcaattccatgctcgtg---gtat 312  Q
    || || |||||||||||| |||| ||  || ||||| |||||||| | ||| | |||||||||||||||||||| | ||||| |||| |  ||    |||    
T  37490785 aatttgaggtttccttcgttgtctatcaaacttgattgtaagcaaatcgttgacgacatctctagcaatctcaataccaatttcatg-tgttgacattat 37490883  T
Q  313 tctgattggttgcaaagcttcacttctgaatcatcaaaactttaagataagtttcatcaggagacaaacaaataatgtt 391  Q
    | ||| || ||||||||||||||| |||||||||||||||||| ||||||||||||| || ||||||  ||||||||||    
T  37490884 tttgaatgattgcaaagcttcactactgaatcatcaaaactttcagataagtttcattagaagacaagtaaataatgtt 37490962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 142 - 404
Target Start/End: Original strand, 9252254 - 9252516
Alignment:
Q  142 cttggtttaaaggcctcccacaacccaacaaggtggaagcaagaggtttaaaagaagcaacaatctgacttggtaaattaaggtttccttcggtgtccat 241  Q
    |||||||||||||  |||||||| ||||| ||||||||||||||| |||||||||||| | ||  ||  ||| ||| || |||||| ||||| |||| ||    
T  9252254 cttggtttaaaggtatcccacaatccaacgaggtggaagcaagagatttaaaagaagcgataaattggtttgataatttgaggttttcttcg-tgtctat 9252352  T
Q  242 tgaaattgatcgtaagcaagtggtttatgacatctctagcaatctcaacatcaattccatgctc-gtggtattctgattggttgcaaagcttcacttctg 340  Q
      || ||||| |||||||||||||| | | ||||||||||||||| | || ||||| |||| || | | |||||||| |||| |||||||||||||| ||    
T  9252353 caaacttgattgtaagcaagtggttgacggcatctctagcaatctaagcaccaatttcatgttcagcgctattctgaatggtggcaaagcttcacttttg 9252452  T
Q  341 aatcatcaaaactttaagataagtttcatcaggagacaaacaaataatgtttcccatttattag 404  Q
    ||||||||||||||||| ||||||||||| |  |||||||| ||||||||| ||||||| ||||    
T  9252453 aatcatcaaaactttaacataagtttcattaaaagacaaacgaataatgttacccatttgttag 9252516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 84 - 199
Target Start/End: Complemental strand, 13019258 - 13019143
Alignment:
Q  84 tatggggtcagcatgtgtcttagaggggatcaatgggagtatattagggagaagaaatcttggtttaaaggcctcccacaacccaacaaggtggaagcaa 183  Q
    ||||||||| ||||| ||||||||||||||  | ||||||  ||||||| ||||| | ||||||||||||||||||||||| ||||| |||  |||||||    
T  13019258 tatggggtcggcatgcgtcttagaggggattgaggggagttcattagggcgaagacaacttggtttaaaggcctcccacaatccaacgaggcagaagcaa 13019159  T
Q  184 gaggtttaaaagaagc 199  Q
    | ||||||||||||||    
T  13019158 gtggtttaaaagaagc 13019143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 326 - 388
Target Start/End: Complemental strand, 13019027 - 13018965
Alignment:
Q  326 aaagcttcacttctgaatcatcaaaactttaagataagtttcatcaggagacaaacaaataat 388  Q
    |||||||||| ||||||||||||||| ||||||||||||||||| ||||||||| ||||||||    
T  13019027 aaagcttcacatctgaatcatcaaaattttaagataagtttcattaggagacaatcaaataat 13018965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 197
Target Start/End: Original strand, 10785867 - 10786015
Alignment:
Q  49 atgttgatgcaacaaatttcaaggagcaagtatgttatggggtcagcatgtgtcttagaggggatcaatgggagtatattagggagaagaaatcttggtt 148  Q
    |||||||| |||||| ||| ||||| ||||  ||||||||| || | |||||| | |||||||||| | ||||||  ||||| | ||||| | ||||||     
T  10785867 atgttgatacaacaatttttaaggaacaaggttgttatgggatcggtatgtgtttgagaggggatcgaggggagttcattagagcgaagacaacttggta 10785966  T
Q  149 taaaggcctcccacaacccaacaaggtggaagcaagaggtttaaaagaa 197  Q
     |||||| |||||||||||||  | ||  ||||||||||| ||||||||    
T  10785967 caaaggcatcccacaacccaaagaagtaaaagcaagaggtctaaaagaa 10786015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 196
Target Start/End: Original strand, 37262601 - 37262736
Alignment:
Q  62 aaatttcaaggagcaagtatgttatggggtcagcatgtgtcttagaggggatcaatgggagtatattagggagaagaaatcttggtttaaaggcctccca 161  Q
    |||||| |||||||||| |||||| ||||||   |||| |||||||||||||| | ||||||| |||   ||||||| | ||| |||||||| ||||| |    
T  37262601 aaattttaaggagcaaggatgttaaggggtcgatatgtatcttagaggggatcgaggggagtacattgacgagaagacaacttagtttaaagacctccta 37262700  T
Q  162 c-aacccaacaaggtggaagcaagaggtttaaaaga 196  Q
    | || ||||| || ||||||||| |||| |||||||    
T  37262701 caaatccaacgagatggaagcaataggtgtaaaaga 37262736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 162 - 445
Target Start/End: Original strand, 23269893 - 23270176
Alignment:
Q  162 caacccaacaaggtggaagcaagaggtttaaaagaagcaacaatctgacttggtaaattaaggtttccttcggtgtccattgaaattgatcgtaagcaag 261  Q
    ||||||||  ||| ||||||||||||| |||||||||| | ||  || |||||||  ||||| | | | |||||||| || ||| ||||| | ||||||     
T  23269893 caacccaatgaggcggaagcaagaggtctaaaagaagcgagaaagtggcttggtactttaagatatacatcggtgtctatcgaacttgattgcaagcaa- 23269991  T
Q  262 tggtttatgacatctctagcaatctcaacatcaattccatgctcgtgg-tattctgattggttgcaaagcttcacttctgaatcatcaaaactttaagat 360  Q
    ||||| | |||||||||||||||||||||| ||| |||| | |||  | ||||||||    |||||||||||||||| ||||||||||||||||||||||    
T  23269992 tggttgacgacatctctagcaatctcaacaccaaatccacgttcgacgctattctgaacacttgcaaagcttcacttatgaatcatcaaaactttaagat 23270091  T
Q  361 aagtttcatcaggagacaaacaaataatgtttcccatttattagtcagagtggcgttatcttatggtagttccaaagttcatgat 445  Q
    ||||||||| || |||||| ||||||||||| | || || ||||  || | | | |||||||||| ||||||| |||||||||||    
T  23270092 aagtttcattagaagacaagcaaataatgttgctcacttgttagctagggagtcattatcttatgctagttcccaagttcatgat 23270176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 339 - 435
Target Start/End: Original strand, 14964980 - 14965076
Alignment:
Q  339 tgaatcatcaaaactttaagataagtttcatcaggagacaaacaaataatgtttcccatttattagtcagagtggcgttatcttatggtagttccaa 435  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||| |||||||| || | | | |||||||||  |||||||||    
T  14964980 tgaatcatcaaaactttaagataagtttcatcaagagacaatcaaataatgttgcccacttattagttagggcgccattatcttatactagttccaa 14965076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 397
Target Start/End: Original strand, 26917408 - 26917457
Alignment:
Q  348 aaaactttaagataagtttcatcaggagacaaacaaataatgtttcccat 397  Q
    ||||||||||||||||||| || ||||||||| |||||| |||| |||||    
T  26917408 aaaactttaagataagttttattaggagacaagcaaatagtgttgcccat 26917457  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 4430513 - 4430573
Alignment:
Q  49 atgttgatgcaacaaatttcaaggagcaagtatgttatggggtcagcatgtgtcttagagg 109  Q
    |||||||||| |||| ||| ||||| |||| ||||||||||||| | |||||||| |||||    
T  4430513 atgttgatgcgacaatttttaaggatcaaggatgttatggggtcggtatgtgtctaagagg 4430573  T

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Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 322 - 391
Target Start/End: Complemental strand, 29468441 - 29468372
Alignment:
Q  322 ttgcaaagcttcacttctgaatcatcaaaactttaagataagtttcatcaggagacaaacaaataatgtt 391  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  29468441 ttgcaaagcttcacttatgaatcatcaaaactttaagataagtttcattatgagacaaacaaataatgtt 29468372  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 36010227 - 36010310
Alignment:
Q  29 agtgggagcagtaaaatgctatgttgatgcaacaaatttcaaggagcaagtatgttatggggtcagcatgtgtcttagagggga 112  Q
    ||||||||| || |||||  ||||||||||||||| ||| |||||||||||||  |||||| || | |||||||||||||||||    
T  36010227 agtgggagcggtgaaatgaaatgttgatgcaacaatttttaaggagcaagtattctatgggatcggtatgtgtcttagagggga 36010310  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 390
Target Start/End: Complemental strand, 47813933 - 47813892
Alignment:
Q  349 aaactttaagataagtttcatcaggagacaaacaaataatgt 390  Q
    |||||||||||||||||||||| |||||||| ||||| ||||    
T  47813933 aaactttaagataagtttcatccggagacaagcaaattatgt 47813892  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 390
Target Start/End: Original strand, 43059104 - 43059148
Alignment:
Q  346 tcaaaactttaagataagtttcatcaggagacaaacaaataatgt 390  Q
    |||||| ||||||||||||||||| |  |||||||||||||||||    
T  43059104 tcaaaattttaagataagtttcattataagacaaacaaataatgt 43059148  T

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