View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10524_13 (Length: 399)
Name: NF10524_13
Description: NF10524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10524_13 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 49464680 - 49465065
Alignment:
| Q |
1 |
atgtgatgtaacaaataataaaatctaggaaacctgattgtaccatatttaat-gaaaacttgcaaggccaaccaaagtagttcttctatttatagcata |
99 |
Q |
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| T |
49464680 |
atgtgatgtaacaaataataaaatctaggaaacctgattgtaccatatttaatagaaaacttgcaaggccaaccaaagtagttcttctatttatagcata |
49464779 |
T |
|
| Q |
100 |
agtgttaacataataaatcaacggttaaatatatttagtcatacaaaataggaaaacatcaatgttaaatccctcaaattttaaaagcagttttccccaa |
199 |
Q |
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| T |
49464780 |
agtgttaacataataaatcaacggttaaatatatttagtcatacaaaataggaaaacatcaatgttaaatccctcaaattttaaaagcagttttccccaa |
49464879 |
T |
|
| Q |
200 |
cgaagttgagtttagggaccaaacggcccatgcttatcagaaaacatgactaaaggtaaacatttatctattttttaagataaaagacatttataaccca |
299 |
Q |
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| T |
49464880 |
cgaagttgagtttagggacc--acggcccatgcttatcagaaaacatgactaaaggtaaacatttatctattttttaagataaaagacatttataaccca |
49464977 |
T |
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| Q |
300 |
taaataaatgcttagatagtgagaaaaatatgattatgatttggagagtgagaatccaaattaatattgagttcattacttgcatatt |
387 |
Q |
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| T |
49464978 |
taaataaatgcttagatagtgagaaaaatatgattatgatttggagagtgagaatccaaattaatattgagttcattacctgcatatt |
49465065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 264 - 387
Target Start/End: Complemental strand, 1093503 - 1093380
Alignment:
| Q |
264 |
tatctattttttaagataaaagacatttataacccataaataaatgcttagatagtgagaaaaatatgattatgatttggagagtgagaatccaaattaa |
363 |
Q |
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| T |
1093503 |
tatctactttttaagattagaaacatatataacccataaataaatgcctagatatacaaataaatttgattatgattttgagagtgagaatccaaattaa |
1093404 |
T |
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| Q |
364 |
tattgagttcattacttgcatatt |
387 |
Q |
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||||||||||||||| |||||||| |
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| T |
1093403 |
tattgagttcattacctgcatatt |
1093380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 1093889 - 1093841
Alignment:
| Q |
145 |
aaataggaaaacatcaatgttaaatccctcaaattttaaaagcagtttt |
193 |
Q |
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| T |
1093889 |
aaatagaaaaacatcaatgttaaatctctcaaatttaaaaaccagtttt |
1093841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 82 - 161
Target Start/End: Complemental strand, 29463516 - 29463438
Alignment:
| Q |
82 |
tcttctatttatagcataagtgttaacataataaatcaacggttaaatatatttagtcatacaaaataggaaaacatcaa |
161 |
Q |
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| T |
29463516 |
tcttctatttataacataagagtta-cataataaatcaagggtcaaatatattcagtcatacaaaatagaaaaacatcaa |
29463438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 325 - 387
Target Start/End: Complemental strand, 29463178 - 29463116
Alignment:
| Q |
325 |
aaatatgattatgatttggagagtgagaatccaaattaatattgagttcattacttgcatatt |
387 |
Q |
| |
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|||| |||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
29463178 |
aaatctgattatgatttagagagtgagaatccaaattaatattgagtttattacctgcatatt |
29463116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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