View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10524_14 (Length: 396)
Name: NF10524_14
Description: NF10524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10524_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 49 - 388
Target Start/End: Complemental strand, 4483130 - 4482791
Alignment:
| Q |
49 |
attatcccatcaatggaacctataatgacatggttcagcttgtctataacaaggtatcaaatctatcttttctttgaaatgaaatgttttattttggttt |
148 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4483130 |
attatcccatcaatggaacctataatgatatggttcagcttgtctataacaaggtatcaaatctatcttttctttgaaatgaaatgttttattttggttt |
4483031 |
T |
|
| Q |
149 |
ctatttgattatcattatcccccctatcaattgaagactcggccctttctgtgataatgtcttcatagactagccgtcgaatatgacaaagttcatttat |
248 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4483030 |
ctattttattatcattatcccccctatcaattgaagactcatccctttctgtgatgatgtcttcatagactagccgtcgaatatgacaaagttcatttat |
4482931 |
T |
|
| Q |
249 |
cattagcgattaggaacaactaataactggcattaaatgcaacttaactattttgagaattgatttgtttttatatattgattgggactttttgtttatg |
348 |
Q |
| |
|
|||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
4482930 |
cattagcgattaggaatagtgaataactgacattaaatgcaacttaactattttgagaattgattgttttttatttattgattgggactttttgtttatg |
4482831 |
T |
|
| Q |
349 |
tgtggttaaacaatgatggaagacttacgacgcctttgtt |
388 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4482830 |
tttggttaaacaatgatggaagacttacgacgcttttgtt |
4482791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 49 - 178
Target Start/End: Complemental strand, 4488102 - 4487968
Alignment:
| Q |
49 |
attatcccatcaatggaacctataatgacatggttcagcttgtctataacaaggtatcaaatctatcttt-----tctttgaaatgaaatgttttatttt |
143 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||| |
|
|
| T |
4488102 |
attatcccatcgatggaacctataatgatttggttcagcttgtctataacaaggtatcaaatctatcttttcttctctttgaaatgaaatgcttaatttt |
4488003 |
T |
|
| Q |
144 |
ggtttctatttgattatcattatcccccctatcaa |
178 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||| |
|
|
| T |
4488002 |
ggtttctatttgattatcatcctcctccctatcaa |
4487968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 375
Target Start/End: Complemental strand, 4487836 - 4487783
Alignment:
| Q |
322 |
tatattgattgggactttttgtttatgtgtggttaaacaatgatggaagactta |
375 |
Q |
| |
|
|||||||||| ||| || |||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
4487836 |
tatattgatttggaattgttgtttatatgtggctaaacaatgatggaagactta |
4487783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 34606016 - 34606071
Alignment:
| Q |
49 |
attatcccatcaatggaacctataatgacatggttcagcttgtctataacaaggta |
104 |
Q |
| |
|
||||||||||||| | |||||||||||| ||||||| ||||| |||||||||||| |
|
|
| T |
34606016 |
attatcccatcaacgcaacctataatgatctggttcaacttgtttataacaaggta |
34606071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University