View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10524_15 (Length: 390)
Name: NF10524_15
Description: NF10524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10524_15 |
 | |
|
| [»] chr2 (5 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 13 - 390
Target Start/End: Complemental strand, 21434537 - 21434159
Alignment:
| Q |
13 |
aatatcagattatctttatgcatccgccatacctacaacatttgttagcaacattttcatacattttctataaaa-gtggcgacttctgaatcattaagt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
21434537 |
aatatcagattatctttatgcatccgccatacctacaacatttgttagcaacattttcatacattttctataaaaagtggcgacttctgaatcattaagt |
21434438 |
T |
|
| Q |
112 |
ggatatatatttagcacatttgaaactatgagcttggaatatagagaataaactttagaggaatggttcattaaaacaccaagtttaccaataatcagga |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21434437 |
ggatatatatttagcacatttgaaactatgagcttggaatatagagaataaactttagaggaatggttcattaaaacaccaagtttaccaataatcagga |
21434338 |
T |
|
| Q |
212 |
aaaaccctcactaataatccaagatggtagtcttttataagctttaataaatagatcaattatgatttttatagtcccttgggcacaaactcatgttaga |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21434337 |
aaaaccctcactaataatccaagatggtagtcttttataagctttaataaatagatcaattatgatttttatagtcccttgggcacaaactcattttaga |
21434238 |
T |
|
| Q |
312 |
ccaaaagagcgattttagaatgagatatttgaaggatgctattaatgagttgtatttataacttactagccgattttgt |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21434237 |
ccaaaagagcgattttagaatgagatatttgaaggatgctattaatgagttgtatttataacttactagccgattttgt |
21434159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 27153358 - 27153196
Alignment:
| Q |
17 |
tcagattatctttatgcatccgccatacctacaacatttgttagcaacattttcatacattttctataaaag-tggcgacttctgaatca----ttaagt |
111 |
Q |
| |
|
||||||||||||| ||| || |||||||||||||||||||||||||||||||||| ||||||| | | ||||||||||||| |||||| |
|
|
| T |
27153358 |
tcagattatctttgtgcttctgccatacctacaacatttgttagcaacattttca----------ataaaaggtagtgacttctgaatcattaattaagt |
27153269 |
T |
|
| Q |
112 |
ggatatatatttagcacatttgaaactatgagcttggaatatagagaataaactttagaggaatggttcatta |
184 |
Q |
| |
|
||||| || ||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||| |
|
|
| T |
27153268 |
ggatagatctttagcacatttgaaactatgagctgggtatttagagaataaactttagaggaatggttcatta |
27153196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 26990263 - 26990180
Alignment:
| Q |
99 |
tgaatcattaagtggatatatatttagcacatttgaaactatgagcttggaatatagagaataaactttagaggaatggttcat |
182 |
Q |
| |
|
||||||||||| |||||| || ||| ||||||||||| |||||| ||| | |||||||||||||||||||||||||| ||||| |
|
|
| T |
26990263 |
tgaatcattaaatggatagatcttttgcacatttgaatctatgaactttgtctatagagaataaactttagaggaatgattcat |
26990180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 26990154 - 26990122
Alignment:
| Q |
184 |
aaaacaccaagtttaccaataatcaggaaaaac |
216 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
|
|
| T |
26990154 |
aaaacaccaagttaaccaataatcaggaaaaac |
26990122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 27029123 - 27029087
Alignment:
| Q |
151 |
tatagagaataaactttagaggaatggttcattaaaa |
187 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
27029123 |
tatagagaataaaatttagaggaatgattcattaaaa |
27029087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 34692325 - 34692242
Alignment:
| Q |
99 |
tgaatcattaagtggatatatatttagcacatttgaaactatgagcttggaatatagagaataaactttagaggaatggttcat |
182 |
Q |
| |
|
||||||||||| |||||| || ||| ||||||||||| |||||| ||| | |||||||||||||||||||||||||| ||||| |
|
|
| T |
34692325 |
tgaatcattaaatggatagatcttttgcacatttgaatctatgaactttgtctatagagaataaactttagaggaatgattcat |
34692242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 34692216 - 34692184
Alignment:
| Q |
184 |
aaaacaccaagtttaccaataatcaggaaaaac |
216 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
|
|
| T |
34692216 |
aaaacaccaagttaaccaataatcaggaaaaac |
34692184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University