View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10524_16 (Length: 360)
Name: NF10524_16
Description: NF10524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10524_16 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 29 - 360
Target Start/End: Original strand, 38320243 - 38320574
Alignment:
| Q |
29 |
ataattaacagttttgaaatgtaatttaggacattgaagaaatatcacaagaaaatgtggaatctattggcgagagagatcaattatggttggttaaaag |
128 |
Q |
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| T |
38320243 |
ataattaacagtgttgaaatgtaatttaggacattgaagaaatatcacaagaaaatgtggaatctattggcgagatagatcaattatggttagttaaaag |
38320342 |
T |
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| Q |
129 |
gtgtgcttctatgatcctttcaaatgattttccctttgannnnnnngagcgcgagggtatgagtaacttcatgaaggtcttaaatccaaatgctgttatg |
228 |
Q |
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| T |
38320343 |
gtgtgcttctatgatcctttcaaatgattttccctttgatttttttgagcgcgagggtatgagtaacttcatgaaggtcttaaatccaaatgctgttatg |
38320442 |
T |
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| Q |
229 |
cctcctataaatgttattaaggcttatgtctcggatttgtacacgaaagcgaaactcaagcttaaacaggaattggctaccattcctaataggatatctt |
328 |
Q |
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| T |
38320443 |
cctcctataaatgttattaaggcttatgtctcggatttgtacacgaaagcgaaactcaagcttaaacaggatttggctaccattcctaataggatatctt |
38320542 |
T |
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| Q |
329 |
taactgttgatctgtgggaatcatgcactacc |
360 |
Q |
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| T |
38320543 |
taactgttgatctgtgggaatcatgcactacc |
38320574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 130 - 350
Target Start/End: Original strand, 38305518 - 38305738
Alignment:
| Q |
130 |
tgtgcttctatgatcctttcaaatgattttccctttgannnnnnngagcgcgagggtatgagtaacttcatgaaggtcttaaatccaaatgctgttatgc |
229 |
Q |
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| T |
38305518 |
tgtgcttctatgatcctttcaaatgattttccctttgagttttttgagcgcgaggggatgaggaacttcatgaaggtcttaaatccaaatattgttttgc |
38305617 |
T |
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| Q |
230 |
ctcctataaatgttattaaggcttatgtctcggatttgtacacgaaagcgaaactcaagcttaaacaggaattggctaccattcctaataggatatcttt |
329 |
Q |
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| T |
38305618 |
ctcctgtagatgttattgaggcttatgtctctgatttatacatgaaagagaaactgaagcttaaacaagaattggctaccattcctaataggatatcttt |
38305717 |
T |
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| Q |
330 |
aactgttgatctgtgggaatc |
350 |
Q |
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| T |
38305718 |
aacttttgatttgtgggaatc |
38305738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 206 - 350
Target Start/End: Original strand, 38316322 - 38316466
Alignment:
| Q |
206 |
tcttaaatccaaatgctgttatgcctcctataaatgttattaaggcttatgtctcggatttgtacacgaaagcgaaactcaagcttaaacaggaattggc |
305 |
Q |
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|||||||||||||||||||||| ||||| | |||||||||| |||||||||| ||| ||||||||||||||| |||||| ||||||||||| |||||||| |
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| T |
38316322 |
tcttaaatccaaatgctgttatacctccgacaaatgttattgaggcttatgtttcgcatttgtacacgaaagagaaactaaagcttaaacaagaattggc |
38316421 |
T |
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| Q |
306 |
taccattcctaataggatatctttaactgttgatctgtgggaatc |
350 |
Q |
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| T |
38316422 |
tagcattcctaataggatatctttaacttttgatttgtgggaatc |
38316466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 208 - 359
Target Start/End: Original strand, 38325169 - 38325320
Alignment:
| Q |
208 |
ttaaatccaaatgctgttatgcctcctataaatgttattaaggcttatgtctcggatttgtacacgaaagcgaaactcaagcttaaacaggaattggcta |
307 |
Q |
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||||||| |||||||||||| ||||||| |||||||||| ||||||||||| | ||||||||| ||||| |||| ||||||||||| ||||||||| |
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| T |
38325169 |
ttaaatcgaaatgctgttatacctcctacaaatgttattgaggcttatgtcactcatttgtacatgaaagagaaatctaagcttaaacaacaattggcta |
38325268 |
T |
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| Q |
308 |
ccattcctaataggatatctttaactgttgatctgtgggaatcatgcactac |
359 |
Q |
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| T |
38325269 |
ccattcctaatagggtatctttaacttttgatttgtgggaatcttgcactac |
38325320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 207 - 350
Target Start/End: Original strand, 38312910 - 38313057
Alignment:
| Q |
207 |
cttaaatccaaatgctgttatgcctcctataaatgttattaaggcttatgtctcggatttgtacacgaaagcgaaactcaagcttaaacaggaattggct |
306 |
Q |
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| T |
38312910 |
cttaaatccaaatgttgttatgcctccttcaaatgttcttgaggcttatgtctccgatttgtacacgaatcagaaactcaagcttaagcaagaattggct |
38313009 |
T |
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| Q |
307 |
accattcct----aataggatatctttaactgttgatctgtgggaatc |
350 |
Q |
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| T |
38313010 |
accattcctaataaataggatatctttaacttttgatttgtgggaatc |
38313057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 261 - 350
Target Start/End: Original strand, 38299730 - 38299819
Alignment:
| Q |
261 |
ggatttgtacacgaaagcgaaactcaagcttaaacaggaattggctaccattcctaataggatatctttaactgttgatctgtgggaatc |
350 |
Q |
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| T |
38299730 |
ggatttgtacactgaagagaaactcaatattaaacaacagctggctactattcctaataggatatctttaacttttgatctgtgggaatc |
38299819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 359
Target Start/End: Original strand, 38308385 - 38308480
Alignment:
| Q |
264 |
tttgtacacgaaagcgaaactcaagcttaaacaggaattggctaccattcctaataggatatctttaactgttgatctgtgggaatcatgcactac |
359 |
Q |
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| T |
38308385 |
tttgtacacggaagagaaacataagctcaaacaacaactggctaccattccttataagatatctttaacctttgagttgtgggaatcttgtactac |
38308480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 206 - 350
Target Start/End: Complemental strand, 38851023 - 38850879
Alignment:
| Q |
206 |
tcttaaatccaaatgctgttatgcctcctataaatgttattaaggcttatgtctcggatttgtacacgaaagcgaaactcaagcttaaacaggaattggc |
305 |
Q |
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|||||||||||||| | ||| ||||||| ||||||||| | ||||| || || ||||||||||||||| ||||| ||||||||||| |||| | |
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| T |
38851023 |
tcttaaatccaaatattcctatacctcctagaaatgttatcgaagcttacgtttcacatttgtacacgaaagagaaacctaagcttaaacaacaattaac |
38850924 |
T |
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| Q |
306 |
taccattcctaataggatatctttaactgttgatctgtgggaatc |
350 |
Q |
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| T |
38850923 |
taccattcctaataggatatctttatcttttgatttgtgggaatc |
38850879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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