View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10524_19 (Length: 329)
Name: NF10524_19
Description: NF10524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10524_19 |
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Alignment Details
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 202 - 308
Target Start/End: Original strand, 35848241 - 35848347
Alignment:
| Q |
202 |
aggtagttcaagttcaacaaaaagaagtagtggatcaaatgaaagaagaagaaatggtgtaagacaatatgttagatcaaagatgcctaggcttcggtgg |
301 |
Q |
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| T |
35848241 |
aggtagttcaagttcaacaaaaagaagtagtggatcaaatgaaagaagaagaaatggtgtaagacaatatgttagatcaaagatgcctaggcttcggtgg |
35848340 |
T |
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| Q |
302 |
actcctg |
308 |
Q |
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||||||| |
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| T |
35848341 |
actcctg |
35848347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 35848053 - 35848154
Alignment:
| Q |
14 |
gaacatggtgaggacacttcaatgggatcttcatcacataataagtgttcaatatcctttgatttgaatgaagaagctagtcgtagtgatcaagatgtta |
113 |
Q |
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| T |
35848053 |
gaacatggtgaggacacttcaatgggatcttcatcacataataagtgttcaatatcctttgatttgaatgaagaagctagtcgtagtgatcaagatgtta |
35848152 |
T |
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| Q |
114 |
ac |
115 |
Q |
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| T |
35848153 |
ac |
35848154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 5691179 - 5691271
Alignment:
| Q |
14 |
gaacatggtgaggacacttcaatgggatcttcatcacataataagtgttcaatatcctttgatttgaatgaagaagctagtcgtagtgatcaagatgtta |
113 |
Q |
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| T |
5691179 |
gaacatgctgaggacacttcaatgggatcttcac------ataagtgctcaatatcctttgatttgaaagaagaagcta---ttagtgatcaagatgtta |
5691269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 41425812 - 41425754
Alignment:
| Q |
54 |
ataagtgttcaatatcctttgatttgaatgaagaagctagtcgtagtgatcaagatgttaac |
115 |
Q |
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| T |
41425812 |
ataagtgctcaatatcctttgatttgaatgaagaagcta---ttagtgatcaagatgttaac |
41425754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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