View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10524_21 (Length: 302)
Name: NF10524_21
Description: NF10524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10524_21 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 9 - 302
Target Start/End: Original strand, 45141559 - 45141852
Alignment:
| Q |
9 |
gagatgaaaaacaagttgaagaaacagtagctttcgcattggaaaaatatggaaccctagacattatgtttagcaacgctggaattgaaggtggtacgtc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
45141559 |
gagatgaaaaacaagttgaagaaacagtagctttcgcattggaaaaatatggaaccctagacattatgtttagcaacgctggaattgaaggtggtatgtc |
45141658 |
T |
|
| Q |
109 |
tagcagcatactagaatttgatctgaatgaatttgacaacaccatggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45141659 |
tagcagcatactagaatttgatctgaatgaatttgacaacaccatggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatg |
45141758 |
T |
|
| Q |
209 |
gtggagagaaaaatccgtggatccataatttgtactgccagtgtagctgcctctgttgctggttatcgtggccatgattatgtttcgtccaaac |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||| |
|
|
| T |
45141759 |
gtggagagaaaaatccgtggatccataatttgtactgccagtgtagctgcctctgttgctggaaatcgtggccatgattatgttacatccaaac |
45141852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 11 - 270
Target Start/End: Original strand, 45152204 - 45152465
Alignment:
| Q |
11 |
gatgaaaaacaagttgaagaaacagtagctttcgcattggaaaaatatggaaccctagacattatgtttagcaacgctggaattgaaggtggtac----- |
105 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| ||||||||||||||||||||| ||||||| ||||| ||||| |||||||||| ||||| ||| |
|
|
| T |
45152204 |
gatgaaaaacaagttgaggaaaccgtagcttttgcattggaaaaatatggaaccttagacatcatgttcagcaatgctggaattggaggtgctactgcta |
45152303 |
T |
|
| Q |
106 |
-gtctagcagcatactagaatttgatctgaatgaatttgacaacaccatggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgttt |
204 |
Q |
| |
|
||||| |||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||| | |
|
|
| T |
45152304 |
tgtctatcagcatactaa----tgatgtaaatgaatttgacaacaccatggccattaatgttcgtggatcagctacaactatcaagcacgctgcgcgtgt |
45152399 |
T |
|
| Q |
205 |
catggtggagagaaaaatccgtggatccataatttgtactgccagtgtagctgcctctgttgctgg |
270 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| || || ||||| |||| || ||||||||| |
|
|
| T |
45152400 |
tatggtggaaagaaaaattcgtggatccataatttgcacggctagtgtggctggctttgttgctgg |
45152465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 113 - 257
Target Start/End: Original strand, 38256127 - 38256271
Alignment:
| Q |
113 |
agcatactagaatttgatctgaatgaatttgacaacaccatggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatggtgg |
212 |
Q |
| |
|
||||||||||||||| | || ||||||||||||||||||||||| | || ||||||| || ||| |||||||||| ||| ||||| | ||||||| |
|
|
| T |
38256127 |
agcatactagaatttaacctaaatgaatttgacaacaccatggctgtgaacattcgtggtgcagctgcaactatcaagcatgcttcacgtgtaatggtgg |
38256226 |
T |
|
| Q |
213 |
agagaaaaatccgtggatccataatttgtactgccagtgtagctg |
257 |
Q |
| |
|
| |||||||| || ||||| |||||||| || ||||||||||||| |
|
|
| T |
38256227 |
aaagaaaaatacgaggatcaataatttgcacagccagtgtagctg |
38256271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University