View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10524_3 (Length: 719)

Name: NF10524_3
Description: NF10524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10524_3
NF10524_3
[»] chr3 (1 HSPs)
chr3 (4-650)||(20693034-20693686)


Alignment Details
Target: chr3 (Bit Score: 602; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 4 - 650
Target Start/End: Complemental strand, 20693686 - 20693034
Alignment:
Q  4 ggaaacccaacattgtcgataaacctatcaacctcaacaaaaccactacggttaaaataagaactacccttttttccaacactaataacaacacaattga 103  Q
    ||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20693686 ggaaaaccgacattgtctataaacctatcaacctcaacaaaaccactacggttaaaataagaactacccttttttccaacactaataacaacacaattga 20693587  T
Q  104 taccaagattcttcaattccatgacacgagcttcggcttttttagcgacggagttgttgaatccgccacataagccacggtcaccggtgatgacgatgag 203  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20693586 taccaagattcttcaattccatgacacgggcttcggcttttttagcgacggagttgttgaatccgccacataagccacggtcaccggtgatgacgatgag 20693487  T
Q  204 tgcgacggttttaacggggcggacggcggttaaagggacgacaacgtcgtcgttttggagggattggttgatggaatggagagtttcggcgaaggcttcg 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  20693486 tgcgacggttttaacggggcggacggcggttaaagggacgacaacgtcgtcgttttggagggattggttgatcgaatggagagtttcggcgaaggcttcg 20693387  T
Q  304 gagaaggggcgggagttgataacggcttcttgtgcgcgacggactctagcggcggcgacgagtttcatagcttcggtgattttttgagttgttttgacgc 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20693386 gagaaggggcgggagttgataacggcttcttgtgcgcgacggactctggcggcggcgacgagtttcatagcttcggtgattttttgagttgttttgacgc 20693287  T
Q  404 tgttgattcggtcgcggatttcgcgtattccgcaacggatttggaagtgttgtggaaagtggggttttgaggggattcttccatttgtgatagtggtgga 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20693286 tgttgattcggtcgcggatttcgcgtattccgcaacggatttggaagtgttgtggaaagtggggttttgaggggattcttccatttgtgatagtggtgga 20693187  T
Q  504 aaacattggggttgttctgagatggggtttgaagaaagttttgg------gtttcagagttggtgatggacggttgatattgcaagaggaaactgtttgg 597  Q
    ||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20693186 aaacattggggttgttctgagatggggtttgaagaaagttttgggtttgggtttcagagttggtgatggacggttgatattgcaagaggaaactgtttgg 20693087  T
Q  598 aagaagaagaaggaagtggtgggcttttcagattgggctttctaattgctctt 650  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20693086 aagaagaagaaggaagtgctgggcttttcagattgggctttctaattgctctt 20693034  T

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