View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10524_4 (Length: 701)
Name: NF10524_4
Description: NF10524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10524_4 |
 | |
|
| [»] scaffold0479 (1 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 14 - 362
Target Start/End: Complemental strand, 4842995 - 4842647
Alignment:
| Q |
14 |
gaacaacaaaagagcaagagagaaagagggccttgctcaagagaaaagtcatcatcatagagagttttcttgtgagagaaatagtgagccaatttgtgag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4842995 |
gaacaacaaaagagcaagagagaaagagagccttgctcaagagaaaagtcatcctcataaagagttttcttgtgagagaaatattgagccaatttgtgag |
4842896 |
T |
|
| Q |
114 |
tgtgtttcttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattatggtggaagttttaagaggccc |
213 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
4842895 |
agtgttccttaaaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcctattatcattatagtggaagttttaagaggccc |
4842796 |
T |
|
| Q |
214 |
aagggtcccgtggttttttccctttctcacattgaaaaggttttccacgctaaaattttctctgtgtcattacacttatatttcacgtttccgctagtgc |
313 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4842795 |
aagggtcctgtggttttttccctttctcacattgagaaggttttccacgctaaaattctctttgtgtcattacacttatatttcacgtttccgctagtgc |
4842696 |
T |
|
| Q |
314 |
ctattttgggttcacggaggaaggaaattatgcaggcatttcccaacag |
362 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4842695 |
ctattttgagttcacggaggagggaaattatgcaggcatttcccaacag |
4842647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 9 - 361
Target Start/End: Complemental strand, 4835925 - 4835575
Alignment:
| Q |
9 |
gagatgaacaacaaaagagcaagagagaaagagggccttgctcaagagaaaagtcatcatcatagagagttttcttgtgagagaaatagtgagccaattt |
108 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4835925 |
gagaagaacaacaaaagagcaagagagaaagagagccttgctcaagagaaaagtcatcctcatagagagttttcttgtgagagaaatagtgagccaattt |
4835826 |
T |
|
| Q |
109 |
gtgagtgtgtttcttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattatggtggaagttttaaga |
208 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
4835825 |
gtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgcattcccattatcattatagtggaagttttaaga |
4835726 |
T |
|
| Q |
209 |
ggcccaagggtcccgtggttttttccctttctcacattgaaaaggttttccacgctaaaattttctctgtgtcattacacttatatttcacgtttccgct |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||| || |
|
|
| T |
4835725 |
ggcccaagggtcccgtggttttttccctttctcacattgagaaggttttccacgctaaaa--ttctctgtgtcattacgtttatatttcacgtttccact |
4835628 |
T |
|
| Q |
309 |
agtgcctattttgggttcacggaggaaggaaattatgcaggcatttcccaaca |
361 |
Q |
| |
|
||||||||||||| ||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
4835627 |
agtgcctattttgagttcatggaggagggaaattatgcaggcatttcccaaca |
4835575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 22 - 361
Target Start/End: Complemental strand, 25857467 - 25857131
Alignment:
| Q |
22 |
aaagagcaagagagaaagagggccttgctcaagagaaaagtcatcatcatagagagttttcttgtgagagaaatagtgagccaatttgtgagtgtgtttc |
121 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
25857467 |
aaagagcaagagagaaagagagccttgctcaagagaaaagtcatcctcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgttcc |
25857368 |
T |
|
| Q |
122 |
ttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattatggtggaagttttaagaggcccaagggtcc |
221 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
25857367 |
ttacaaattaagagatatattgtagtgagatccacctaaaggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcc |
25857268 |
T |
|
| Q |
222 |
cgtggttttttccctttctcacattgaaaaggttttccacgctaaaattttctctgtgtcattacacttatatttcacgtttccgctagtgcctattttg |
321 |
Q |
| |
|
|||||| |||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
25857267 |
cgtggt-ttttccttttctcacattgagaaggttttccacgctaaaa--ttctctgtgtcattacgcttatatttcacgtttccgctagtgcctatttta |
25857171 |
T |
|
| Q |
322 |
ggttcacggaggaaggaaattatgcaggcatttcccaaca |
361 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25857170 |
agttcacggaggagggaaattatgcaggcatttcccaaca |
25857131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 32 - 361
Target Start/End: Complemental strand, 24379607 - 24379279
Alignment:
| Q |
32 |
agagaaagagggccttgctcaagagaaaagtcatcatcatagagagttttcttgtgagagaaatagtgagccaatttgtgagtgtgtttcttacaaattg |
131 |
Q |
| |
|
|||||||||| | ||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||| ||||| ||||||||||| |
|
|
| T |
24379607 |
agagaaagagagtcttgctcgagagaaaagtcatcctcatagagagttttcttgtgaaagaaatagtgagccaatttatgagagtgttccttacaaattg |
24379508 |
T |
|
| Q |
132 |
agagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattatggtggaagttttaagaggcccaagggtcccgtggttttt |
231 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| | ||||||||| ||| |
|
|
| T |
24379507 |
agagatatattgtagggagatccacctaagggtgaagttgttgtattcctattatcattatagtggaagttttaagaggcccaaagatcccgtggt-ttt |
24379409 |
T |
|
| Q |
232 |
tccctttctcacattgaaaaggttttccacgctaaaattttctctgtgtcattacacttatatttcacgtttccgctagtgcctattttgggttcacgga |
331 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||| ||||| ||||||||| |||||||| |||||||| |||||||||||||| ||||||||| |
|
|
| T |
24379408 |
tccctttctcacattgagaaggttttccacgttaaaattatctctatgtcattacgtttatattttacgtttccactagtgcctattttaagttcacgga |
24379309 |
T |
|
| Q |
332 |
ggaaggaaattatgcaggcatttcccaaca |
361 |
Q |
| |
|
||| ||||||||| || ||||| |||||| |
|
|
| T |
24379308 |
ggagagaaattatgtagacattttccaaca |
24379279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 14 - 361
Target Start/End: Complemental strand, 27341276 - 27340935
Alignment:
| Q |
14 |
gaacaacaaaagagcaagagagaaagagggccttgctcaa--gagaaaagtcatcatcatagagagttttcttgtgagagaaatagtgagccaatttgtg |
111 |
Q |
| |
|
|||||||||||| |||||||||||||| | | ||||||| ||||||||| ||| ||||| ||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
27341276 |
gaacaacaaaag--caagagagaaagagagtcatgctcaaaagagaaaagttatcctcatatagagtttctttgtgagagaaatagtgagccaacctgtg |
27341179 |
T |
|
| Q |
112 |
agtgtgtttcttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattatggtggaagttttaagaggc |
211 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||||||||||| |||| | |||||| ||||||| ||||||||||| | || |||| ||||||||| |
|
|
| T |
27341178 |
agagtgttccttacaaattgagagatatattgtagtgagatccatctaa--gagaagttattgtatttccattatcattgtagtagaag-tttaagaggt |
27341082 |
T |
|
| Q |
212 |
ccaagggtcccgtggttttttccctttctcacattgaaaaggttttccacgctaaaattttctctgtgtcattacacttatatttcacgtttccgctagt |
311 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
27341081 |
acaagggtcccgtggttttt--cctttcttacattgagaaggttttccacgctaaaa--ttctctgtgtcattacgcttatatttcatgtttccgctagt |
27340986 |
T |
|
| Q |
312 |
gcctattttgggttcacggaggaaggaaattatgcagg-catttcccaaca |
361 |
Q |
| |
|
|||||||||| |||||| | || |||||||||| ||| ||||||||||| |
|
|
| T |
27340985 |
gcctattttgagttcacaaaagagggaaattatggaggttatttcccaaca |
27340935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 26 - 246
Target Start/End: Original strand, 4603542 - 4603760
Alignment:
| Q |
26 |
agcaagagagaaagagggccttgctcaagagaaaagtcatcatcatagagagttttcttgtgagagaaatagtgagccaatttgtgagtgtgtttcttac |
125 |
Q |
| |
|
||||||| |||||||| | |||||||||||||||||| ||| ||||| |||||||||||||||||||||||| |||||||||||| ||||| | ||||| |
|
|
| T |
4603542 |
agcaagatagaaagagagtcttgctcaagagaaaagttatcttcataaagagttttcttgtgagagaaatagagagccaatttgtaagtgt--tccttac |
4603639 |
T |
|
| Q |
126 |
aaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattatggtggaagttttaagaggcccaagggtcccgtg |
225 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||| |||||||||||||| ||||||||| |
|
|
| T |
4603640 |
aaattgaaagatatattgtagtgagatccacctaagggtaaagttgttgtatttccattatcattatagtggaaggtttaagaggcccaaaggtcccgtg |
4603739 |
T |
|
| Q |
226 |
gttttttccctttctcacatt |
246 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
4603740 |
gttttttccctttctcccatt |
4603760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 51 - 296
Target Start/End: Complemental strand, 13465264 - 13465024
Alignment:
| Q |
51 |
caagagaaaagtcatcatcatagagagttttcttgtgagagaaatagtgagccaatttgtgagtgtgtttcttacaaattgagagatatattgtagtgag |
150 |
Q |
| |
|
|||||||||||| ||| ||||||| |||||||||||||| |||||||| ||||||||| || ||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
13465264 |
caagagaaaagtgatcctcatagaatgttttcttgtgaga--aatagtgaaccaatttgtaagagtgttccttacaaattgagagatacattgtagtgag |
13465167 |
T |
|
| Q |
151 |
atccacctaagggtgaagttgttgtattcccattatcattatggtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgaaa |
250 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||| ||||||||||||||||||||| | |
|
|
| T |
13465166 |
atccacctgagggtgaacttgttgtattcccattatcattatagtggatgttttaagaggcccaagggtcctgtgg-tttttccctttctcacattgaga |
13465068 |
T |
|
| Q |
251 |
aggttttccacgctaaaattttctctgtgtcattacacttatattt |
296 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||| | ||||||| |
|
|
| T |
13465067 |
aggttttccacgctaaaattt--tttgtgtcattacgcatatattt |
13465024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 52 - 361
Target Start/End: Original strand, 17845741 - 17846051
Alignment:
| Q |
52 |
aagagaaaagtcatcatcatagagagttttcttgtgagagaaatagtgagccaatttg----tgagtgtgtttcttacaaattgagagatatattgtagt |
147 |
Q |
| |
|
||||||||||| ||| | ||| ||||||| ||||||||||||||| |||| |||||| |||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
17845741 |
aagagaaaagtgatcctaataaagagtttccttgtgagagaaatattgagtcaatttaattatgagagtgttccttacaaattgagagatatattgtagt |
17845840 |
T |
|
| Q |
148 |
gagatccacctaagggtgaagttgttgtattcccattatcattatggtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattg |
247 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||| |||| ||||| ||||||||| |||| ||||||||| |
|
|
| T |
17845841 |
gagattcacctaagggtgaagttgttgtatttccattatcattatagtggaag-tttaagaggtccaaaggtcctgtggttttt--ccttcctcacattg |
17845937 |
T |
|
| Q |
248 |
aaaaggttttccacgctaaaattttctctgtgtcattacacttatatttcacgtttccgctagtgcctattttgggttcacggaggaaggaaattat-gc |
346 |
Q |
| |
|
|||||||||||| |||||||| ||| |||||| |||| |||||||||||| |||| ||| |||| ||||| |||||||||||| | ||||||| | |
|
|
| T |
17845938 |
ggaaggttttccactctaaaattctct-tgtgtctttacgcttatatttcacatttctcctaatgccaattttaagttcacggaggaggaaaattatgga |
17846036 |
T |
|
| Q |
347 |
aggcatttcccaaca |
361 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
17846037 |
agtcatttcccaaca |
17846051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 9 - 361
Target Start/End: Complemental strand, 38994390 - 38994060
Alignment:
| Q |
9 |
gagatgaacaacaaaagagcaagagagaaagagggccttgctcaagagaaaagtcatcatcatagagagttttc-ttgtgagagaaatagtgagccaatt |
107 |
Q |
| |
|
|||| ||||||||||| | |||||||||||| | | |||||||| |||||||| ||| ||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
38994390 |
gagaagaacaacaaaaaa-caagagagaaagggagttttgctcaaaagaaaagtaatcctcatagagagttttccttgtgagagaaataatgagccaatt |
38994292 |
T |
|
| Q |
108 |
tgtgagtgtgtttcttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattatggtggaagttttaag |
207 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||| |
|
|
| T |
38994291 |
tgtgatagtgttccttacaaattgagagatatattgtagtgagatccacctaagg---------------------tatcattataatgaaagttttaag |
38994213 |
T |
|
| Q |
208 |
aggcccaagggtcccgtggttttttccctttctcacattgaaaaggttttccacgctaaaattttctctgtgtcattacacttatatttcacgtttccgc |
307 |
Q |
| |
|
|||| | |||||||||||| |||||||||||||| |||||| ||||||||||||| ||||||| ||| |||||||||||| |||||||||| ||||||| |
|
|
| T |
38994212 |
aggctcgagggtcccgtgg-tttttccctttctcgcattgagaaggttttccacgttaaaattctctttgtgtcattacatttatatttcatgtttccgt |
38994114 |
T |
|
| Q |
308 |
tagtgcctattttgggttcacggaggaaggaaattatgcaggcatttcccaaca |
361 |
Q |
| |
|
||| ||||||| ||||| ||| || ||||||||||| | ||||||||||| |
|
|
| T |
38994113 |
cggtgtctattttaagttcatggatgatagaaattatgcatgtatttcccaaca |
38994060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 311 - 361
Target Start/End: Original strand, 24380113 - 24380163
Alignment:
| Q |
311 |
tgcctattttgggttcacggaggaaggaaattatgcaggcatttcccaaca |
361 |
Q |
| |
|
||||||||||| |||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
24380113 |
tgcctattttgagttcacagaggagggaaattatgcaggcatttcccaaca |
24380163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 32 - 361
Target Start/End: Original strand, 41481486 - 41481815
Alignment:
| Q |
32 |
agagaaagagggccttgctcaagagaaaagtcatcatcatagagagttttcttgtgagagaaatagtgagccaatttgtgagtgtgtttcttacaaattg |
131 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
41481486 |
agagaaagagagccttgctcaagagaaaagtcatcctcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattg |
41481585 |
T |
|
| Q |
132 |
agagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattatggtggaagttttaagaggcccaagggtcccgtggttttt |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41481586 |
agagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggttttt |
41481685 |
T |
|
| Q |
232 |
tccctttctcacattgaaaaggttttccacgctaaaattttctctgtgtcattacacttatatttcacgtttccgctagtgcctattttgggttcacgga |
331 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
41481686 |
tccctttctcatattgagaaggttttccacgctaaaattctctttgtgtcattacgtttatatttcacgtttccgctagtgtctattttgagttcacgga |
41481785 |
T |
|
| Q |
332 |
ggaaggaaattatgcaggcatttcccaaca |
361 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
41481786 |
ggagggaaattatgcaggcatttcccaaca |
41481815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 32 - 361
Target Start/End: Original strand, 36167485 - 36167813
Alignment:
| Q |
32 |
agagaaagagggccttgctcaagagaaaagtcatcatcatagagagttttcttgtgagagaaatagtgagccaatttgtgagtgtgtttcttacaaattg |
131 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
36167485 |
agagaaagagagccttgctcaagagaaaagtcatcctcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttacaaattg |
36167584 |
T |
|
| Q |
132 |
agagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattatggtggaagttttaagaggcccaagggtcccgtggttttt |
231 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36167585 |
agagatatattatagtgagatccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggt-ccgtggttttt |
36167683 |
T |
|
| Q |
232 |
tccctttctcacattgaaaaggttttccacgctaaaattttctctgtgtcattacacttatatttcacgtttccgctagtgcctattttgggttcacgga |
331 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
36167684 |
tccctttctcatattgagaaggttttccacgctaaaattctctttgtgtcattacgtttatatttcacgtttccgctagtgcctattttgagttcacgga |
36167783 |
T |
|
| Q |
332 |
ggaaggaaattatgcaggcatttcccaaca |
361 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
36167784 |
ggagggaaattatgcaggcatttcccaaca |
36167813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 9 - 356
Target Start/End: Complemental strand, 18951471 - 18951129
Alignment:
| Q |
9 |
gagatgaacaacaaaagagcaagagagaaagagggccttgctcaagagaaaagtcatcatcatagagagttttcttgtgagagaaatagtgagccaattt |
108 |
Q |
| |
|
|||| ||||||||||| | ||||||||||| || | |||| | ||||||||||||||| || ||||||||||||| |||| |||||| ||||||||||| |
|
|
| T |
18951471 |
gagaagaacaacaaaa-atcaagagagaaaaagagtcttgtttaagagaaaagtcatcctcgtagagagttttctcttgagggaaataatgagccaattt |
18951373 |
T |
|
| Q |
109 |
gtgagtgtgtttcttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattatggtggaagttttaaga |
208 |
Q |
| |
|
||||| ||||| |||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
18951372 |
gtgagagtgttccttacaaattgagagataaattatagtgagatcaacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaaga |
18951273 |
T |
|
| Q |
209 |
ggcccaagggtcccgtggttttttccctttctcacattgaaaaggttttccacgctaaaattttctctgtgtcattacacttatatttcacgtttccgct |
308 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
18951272 |
agcccaaaggtctcgtggttttttccctttctcacattgagaaggttttccatgctaaaat----tctgtgtcattacgcttatatttcatgtttccgct |
18951177 |
T |
|
| Q |
309 |
agtgcctattttgggttcacggaggaaggaaattatgcaggcatttcc |
356 |
Q |
| |
|
||||||||||||| |||||||||||| | ||||||||||||||||||| |
|
|
| T |
18951176 |
agtgcctattttgagttcacggaggaggcaaattatgcaggcatttcc |
18951129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 582 - 651
Target Start/End: Complemental strand, 28526332 - 28526263
Alignment:
| Q |
582 |
ctgactgtgtatacttactatcattaaggtctctaacaataaacacttactgttactaaggtccttgaca |
651 |
Q |
| |
|
||||||||| ||||||||||||| | ||||| || ||| |||||||||||| | |||||||||| ||||| |
|
|
| T |
28526332 |
ctgactgtgcatacttactatcagttaggtccctgacagtaaacacttactttcactaaggtccatgaca |
28526263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 584 - 645
Target Start/End: Complemental strand, 32564264 - 32564203
Alignment:
| Q |
584 |
gactgtgtatacttactatcattaaggtctctaacaataaacacttactgttactaaggtcc |
645 |
Q |
| |
|
||||||| ||| ||||||||| | |||||||| ||||||||||| |||| | |||||||||| |
|
|
| T |
32564264 |
gactgtgaatatttactatcagttaggtctctgacaataaacacgtactctcactaaggtcc |
32564203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 23 - 362
Target Start/End: Complemental strand, 9757551 - 9757211
Alignment:
| Q |
23 |
aagagcaagagagaaagagggccttgctcaagagaaaagtcatcatcatagagagttttcttgtgagagaaatagtgagccaatttgtgagtgtgtttct |
122 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||| || |
|
|
| T |
9757551 |
aagagcaagagagaaagagagccttgctcaagagagaagtcatcttcatagagagttttcttttgagagaaatagtgagccaatttgtgagagtgttcct |
9757452 |
T |
|
| Q |
123 |
tacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattatggtggaag--ttttaagaggcccaagggtc |
220 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
9757451 |
tacaaattgagagatatattatagtgagatccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttttaagaggcccaagggtc |
9757352 |
T |
|
| Q |
221 |
ccgtggttttttccctttctcacattgaaaaggttttccacgctaaaattttctctgtgtcattacacttatatttcacgtttccgctagtgcctatttt |
320 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9757351 |
ccgtgg-tttttccctttctcacattgagaaggttttccacgctaaaattctctttgtgtcattacgcttatatttcacgtttccgctagtgcctatttt |
9757253 |
T |
|
| Q |
321 |
gggttcacggaggaaggaaattatgcaggcatttcccaacag |
362 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9757252 |
gagttcacggaggaaggaaattatgcaggcatttaccaacag |
9757211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 344
Target Start/End: Complemental strand, 42683177 - 42682854
Alignment:
| Q |
14 |
gaacaacaaaagagcaagagagaaagagggccttgctcaagagaaaagtcatcatcatagagagttttcttgtgagagaaatagtgagccaatttgtgag |
113 |
Q |
| |
|
||||||||||| ||||||||||| |||| | |||||||||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
42683177 |
gaacaacaaaa-agcaagagagagagagagtcttgctcaagagaaaactcatcctcacaaagagttttcttgtgagagaaatagtgagccaatttgtaag |
42683079 |
T |
|
| Q |
114 |
tgtgtttcttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattatggtggaagttttaagaggccc |
213 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
42683078 |
agtgttccttacaaattgagagatatattgtagtgagatgcacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggtcc |
42682979 |
T |
|
| Q |
214 |
aagggtcccgtggttttttccctttctcacattgaaaaggttttccacgctaaaattttctctgtgtcattacacttatatttcacgtttccgctagtgc |
313 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||| ||||||||||||||| |||| | ||||||||||| |||||||| |||||| |||||||| |
|
|
| T |
42682978 |
aagggtcccgtgattttt--cctttctcacattgagaaggttttccacgctgaaat----tatgtgtcattacgtttatattttacgttttcgctagtgt |
42682885 |
T |
|
| Q |
314 |
ctattttgggttcacggaggaaggaaattat |
344 |
Q |
| |
|
|||||||| |||||||| ||||||||||||| |
|
|
| T |
42682884 |
ctattttgagttcacgggggaaggaaattat |
42682854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 68 - 334
Target Start/End: Complemental strand, 37287174 - 37286910
Alignment:
| Q |
68 |
tcatagagagttttcttgtgagagaaatagtgagccaatttgtgagtgtgtttcttacaaattgagagatatattgtagtgagatccacctaagggtgaa |
167 |
Q |
| |
|
||||||||| ||| ||| ||||||||| |||||||| ||||||| |||| |||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
37287174 |
tcatagagaatttccttctgagagaaacagtgagccgatttgtgttaatgttccttacaaattgagagatatattgtagtgagctccatctaagggtgaa |
37287075 |
T |
|
| Q |
168 |
-gttgttgtattcccattatcattatggtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgaaaaggttttccacgctaa |
266 |
Q |
| |
|
|||||||||||| ||||| ||||| |||||||||| |||| || |||||||||||| ||||| ||||| ||||||||| ||||||||||| ||||| |
|
|
| T |
37287074 |
agttgttgtattcttattattattatagtggaagttt-aagatgcttaagggtcccgtgattttt--cctttttcacattgagaaggttttccatgctaa |
37286978 |
T |
|
| Q |
267 |
aattttctctgtgtcattacacttatatttcacgtttccgctagtgcctattttgggttcacggagga |
334 |
Q |
| |
|
|||||||| | ||||||||| |||||||||||||||||||||||| ||||||| | |||||||||| |
|
|
| T |
37286977 |
aattttctttctgtcattacgtttatatttcacgtttccgctagtgtttattttgagctcacggagga |
37286910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 581 - 651
Target Start/End: Original strand, 21622201 - 21622271
Alignment:
| Q |
581 |
tctgactgtgtatacttactatcattaaggtctctaacaataaacacttactgttactaaggtccttgaca |
651 |
Q |
| |
|
|||||||||| ||||||||||||| | |||||||||||||||||||||||| || ||||||||| |||||| |
|
|
| T |
21622201 |
tctgactgtgcatacttactatcagttaggtctctaacaataaacacttacagtcactaaggtctttgaca |
21622271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 582 - 645
Target Start/End: Complemental strand, 24745819 - 24745756
Alignment:
| Q |
582 |
ctgactgtgtatacttactatcattaaggtctctaacaataaacacttactgttactaaggtcc |
645 |
Q |
| |
|
||||||||||||| ||||||||| | ||||| || ||| |||||||||||||| |||||||||| |
|
|
| T |
24745819 |
ctgactgtgtataattactatcagttaggtccctgacagtaaacacttactgtcactaaggtcc |
24745756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 582 - 644
Target Start/End: Complemental strand, 24753319 - 24753257
Alignment:
| Q |
582 |
ctgactgtgtatacttactatcattaaggtctctaacaataaacacttactgttactaaggtc |
644 |
Q |
| |
|
||||||||| ||| ||||||||| | ||||| || ||| |||||||||||||| ||||||||| |
|
|
| T |
24753319 |
ctgactgtgcataattactatcagttaggtccctgacagtaaacacttactgtcactaaggtc |
24753257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 32 - 361
Target Start/End: Complemental strand, 44782853 - 44782524
Alignment:
| Q |
32 |
agagaaagagggccttgctcaagagaaaagtcatcatcatagagagttttcttgtgagagaaatagtgagccaatttgtgagtgtgtttcttacaaattg |
131 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||| |
|
|
| T |
44782853 |
agagaaagagagccttgctcaagagaaaagtcatcctcatagagagttttcttgtgagagaaatagtgagccaatttgtgagagtgttccttgcaaattg |
44782754 |
T |
|
| Q |
132 |
agagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattatggtggaagttttaagaggcccaagggtcccgtggttttt |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
44782753 |
agagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtggttttt |
44782654 |
T |
|
| Q |
232 |
tccctttctcacattgaaaaggttttccacgctaaaattttctctgtgtcattacacttatatttcacgtttccgctagtgcctattttgggttcacgga |
331 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
44782653 |
tccctttctcatattgagaaggttttccacgctaaaattctctttgtgtcattacgtttatatttcacgtttccgctagtgtctattttgagttcacgga |
44782554 |
T |
|
| Q |
332 |
ggaaggaaattatgcaggcatttcccaaca |
361 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
44782553 |
ggagggaaattatgcaggcatttcccaaca |
44782524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 9 - 361
Target Start/End: Complemental strand, 54967561 - 54967210
Alignment:
| Q |
9 |
gagatgaacaacaaaagagcaagagagaaagagggccttgctcaagagaaaagtcatcatcatagagagttttcttgtgagagaaatagtgagccaattt |
108 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54967561 |
gagaagaacaacaaa-gagcaagagagaaagagaaccttgctcaagagaaaagtcatcctcatagagagttttcttgtgagagaaatagtgagccaattt |
54967463 |
T |
|
| Q |
109 |
gtgagtgtgtttcttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattatggtggaag-ttttaag |
207 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
54967462 |
gtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattatagtggaagtttttaag |
54967363 |
T |
|
| Q |
208 |
aggcccaagggtcccgtggttttttccctttctcacattgaaaaggttttccacgctaaaattttctctgtgtcattacacttatatttcacgtttccgc |
307 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||| ||| |||||||||||||||| |
|
|
| T |
54967362 |
aggcccaagggtcccgtgg-tttttccctttctcatattgagaaggttttccacgctaaaattctctttgtgtcattacgcttttatttcacgtttccgc |
54967264 |
T |
|
| Q |
308 |
tagtgcctattttgggttcacggaggaaggaaattatgcaggcatttcccaaca |
361 |
Q |
| |
|
|||||||||||||| ||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
54967263 |
tagtgcctattttgagttgacggaggagggaaattatgcaggcatttcccaaca |
54967210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 349
Target Start/End: Complemental strand, 54980193 - 54979854
Alignment:
| Q |
9 |
gagatgaacaacaaaagagcaagagagaaagagggccttgctcaagagaaaagtcatcatcatagagagttttcttgtgagagaaatagtgagccaattt |
108 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
54980193 |
gagaagaacaacaaa-gagcaagagagaaagagaaccttgctcaagagaaaagtcatcctcatagagagttttcttgtgagagaaatagcgagccaattt |
54980095 |
T |
|
| Q |
109 |
gtgagtgtgtttcttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattatggtggaag-ttttaag |
207 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
54980094 |
gtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattatagtggaagtttttaag |
54979995 |
T |
|
| Q |
208 |
aggcccaagggtcccgtggttttttccctttctcacattgaaaaggttttccacgctaaaattttctctgtgtcattacacttatatttcacgtttccgc |
307 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||| ||||||||||| ||||||||| ||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
54979994 |
aggcccaagggtcccgtgg-tttttccctttctcatattgagaaggttttccatgctaaaattctctttgtgtcattacacttttatttcacgtttccgc |
54979896 |
T |
|
| Q |
308 |
tagtgcctattttgggttcacggaggaaggaaattatgcagg |
349 |
Q |
| |
|
|||||| ||||||| ||| |||||||| |||||||||||||| |
|
|
| T |
54979895 |
tagtgcttattttgagttgacggaggagggaaattatgcagg |
54979854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 14 - 361
Target Start/End: Original strand, 39298655 - 39299001
Alignment:
| Q |
14 |
gaacaacaaaagagcaagagagaaagagggccttgctcaa--gagaaaagtcatcatcatagagagttttcttgtgagagaaatagtgagccaatttgtg |
111 |
Q |
| |
|
||||||||||| |||||||||||||||| | ||||||||| ||||||||| ||| |||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39298655 |
gaacaacaaaa-agcaagagagaaagagagtcttgctcaaatgagaaaagtgatcctcatggagagttcctttgtgagagaaatagtgagccaatttgtg |
39298753 |
T |
|
| Q |
112 |
agtgtgtttcttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattatggtggaagttttaagaggc |
211 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||| |
|
|
| T |
39298754 |
agagtgtc-cttacaaattgagagatatattgtagttagatccacctaagggtgaagttgttgtattccctttatcattatagtggaag-tttaagaggc |
39298851 |
T |
|
| Q |
212 |
ccaagggtcccgtggttttttccctttctcacattgaaaaggttttccacgctaaaattttctctgtgtcattacacttatatttcacgtttccgctagt |
311 |
Q |
| |
|
||||||||||||| ||||| |||| ||||||||| |||||||| ||| |||||||| ||| |||||||||||||||||||||||||||| |||| | |
|
|
| T |
39298852 |
acaagggtcccgtgattttt--ccttcatcacattgagaaggtttttcacactaaaattatcttcgtgtcattacacttatatttcacgtttctgctaat |
39298949 |
T |
|
| Q |
312 |
gc-ctattttgggttcacggaggaaggaaattat-gcaggcatttcccaaca |
361 |
Q |
| |
|
|| ||||||| ||||| | |||| ||||||||| | || |||||||||||| |
|
|
| T |
39298950 |
gcgctattttaagttcatgaaggagggaaattatggaagtcatttcccaaca |
39299001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 140 - 362
Target Start/End: Complemental strand, 18556523 - 18556304
Alignment:
| Q |
140 |
attgtagtgagatccacctaagggtgaagttgttgtattcccattatcattatggtggaagttttaagaggcccaagggtcccgtggttttttccctttc |
239 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||| ||||||| | |||||||||||||||||| |||||| |
|
|
| T |
18556523 |
attgtaatgagatccacctaagggtgaagttgttgtattctcattgtcattatagtggaagttt-aagaggctcgagggtcccgtggttttttgcctttc |
18556425 |
T |
|
| Q |
240 |
tcacattgaaaaggttttccacgctaaaattttctctgtgtcattacacttatatttcacgtttccgctagtgcctattttgggttcacggaggaaggaa |
339 |
Q |
| |
|
||| ||||| |||||||||||||||||||||| | ||||||||||| ||||||||||||||||| ||| || ||||||||| ||||| |||||| | || |
|
|
| T |
18556424 |
tcagattgagaaggttttccacgctaaaattt--tatgtgtcattacgcttatatttcacgtttctgctggtacctattttgagttcatggaggaggcaa |
18556327 |
T |
|
| Q |
340 |
attatgcaggcatttcccaacag |
362 |
Q |
| |
|
|||||| ||| ||||||||||| |
|
|
| T |
18556326 |
attatgtaggtgtttcccaacag |
18556304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 68 - 361
Target Start/End: Original strand, 17645701 - 17645981
Alignment:
| Q |
68 |
tcatagagagttttcttgtgagagaaatagtgagccaatttgtgagtgtgtttcttacaaattgagagatatattgtagtgagatccacctaagggtgaa |
167 |
Q |
| |
|
||||| ||||||| ||||||||| ||||||||||||||||||| || ||||| |||||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
17645701 |
tcataaagagtttccttgtgagataaatagtgagccaatttgtaagagtgttccttacaaattgagagatacgttgtagtgagatccacctaggg----- |
17645795 |
T |
|
| Q |
168 |
gttgttgtattcccattatcattatggtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgaaaaggttttccacgctaaa |
267 |
Q |
| |
|
||||||||||| |||||||||||| ||||||| ||||||| || |||| |||||||||||||| ||| | | ||||| |||||||||||||||||| |
|
|
| T |
17645796 |
gttgttgtattgtcattatcattatagtggaag-tttaagacgctcaagagtcccgtggttttt----ttttttatattgagaaggttttccacgctaaa |
17645890 |
T |
|
| Q |
268 |
attttctctgtgtcattacacttatatttcacgtttccgctagtgcctattttgggttcacggaggaaggaaattatgcagg-catttcccaaca |
361 |
Q |
| |
|
|||| ||||| |||||||||||| || | ||| | |||||| |||||||| ||||||||| || |||||||||| ||| |||||||||||| |
|
|
| T |
17645891 |
attt----tgtgtgattacacttataatttatgttcctactagtgtctattttgagttcacggatgagggaaattatggaggtcatttcccaaca |
17645981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 172 - 272
Target Start/End: Original strand, 50603225 - 50603322
Alignment:
| Q |
172 |
ttgtattcccattatcattatggtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgaaaaggttttccacgctaaaattt |
271 |
Q |
| |
|
||||||||||||||| ||||| ||||| | ||||||||||| | |||| ||||||||||||| || |||||||||| |||||||||||||||||||||| |
|
|
| T |
50603225 |
ttgtattcccattattattatagtgga-gatttaagaggcctacgggttccgtggttttttc--ttactcacattgagaaggttttccacgctaaaattt |
50603321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 582 - 652
Target Start/End: Original strand, 40206387 - 40206457
Alignment:
| Q |
582 |
ctgactgtgtatacttactatcattaaggtctctaacaataaacacttactgttactaaggtccttgacaa |
652 |
Q |
| |
|
|||| |||| ||||||||||||| | ||||| |||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
40206387 |
ctgagtgtgcatacttactatcagttaggtccctaacagtaaacacttactgttactaaggtccctgacaa |
40206457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 265; Significance: 1e-147; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 9 - 361
Target Start/End: Original strand, 2586 - 2936
Alignment:
| Q |
9 |
gagatgaacaacaaaagagcaagagagaaagagggccttgctcaagagaaaagtcatcatcatagagagttttcttgtgagagaaatagtgagccaattt |
108 |
Q |
| |
|
|||| |||||||||| |||||||||| |||||| |||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2586 |
gagaagaacaacaaa-gagcaagagaaaaagagagccttgctcatgagaaa-gtcatcctcatagagagttttcttgtgagagaaatagtgagccaattt |
2683 |
T |
|
| Q |
109 |
gtgagtgtgtttcttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattatggtggaagttttaaga |
208 |
Q |
| |
|
||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2684 |
gtgagagcgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaaga |
2783 |
T |
|
| Q |
209 |
ggcccaagggtcccgtggttttttccctttctcacattgaaaaggttttccacgctaaaattttctctgtgtcattacacttatatttcacgtttccgct |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
2784 |
ggcccaagggtcccgtggttttttccctttctcacattgagaaggttttccacgctaaaattctctttgtgtcattacgcttatatttcacgtttccgct |
2883 |
T |
|
| Q |
309 |
agtgcctattttgggttcacggaggaaggaaattatgcaggcatttcccaaca |
361 |
Q |
| |
|
|||| |||||||| |||||||||| | |||||||||||| ||||||||||||| |
|
|
| T |
2884 |
agtgtctattttgagttcacggagaagggaaattatgcatgcatttcccaaca |
2936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 9 - 362
Target Start/End: Complemental strand, 342566 - 342216
Alignment:
| Q |
9 |
gagatgaacaacaaaagagcaagagagaaagagggccttgctcaagagaaaagtcatcatcatagagagttttcttgtgagagaaatagtgagccaattt |
108 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
342566 |
gagaagaacaacaaa-gagcaagagagaaagagagccttgctcaagagaaaagtcatcctcatagagagttttcttgtgagagaaatagtgagccaattt |
342468 |
T |
|
| Q |
109 |
gtgagtgtgtttcttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattatggtggaagttttaaga |
208 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
342467 |
gtgagagtgttccttacaaattgagagatatattgtagtcagatacacctaagggtgaaattgttgtattcccattatcattatagtggaagttttaaga |
342368 |
T |
|
| Q |
209 |
ggcccaagggtcccgtggttttttccctttctcacattgaaaaggttttccacgctaaaattttctctgtgtcattacacttatatttcacgtttccgct |
308 |
Q |
| |
|
||||||||| ||||||||||| |||| ||||||| ||||| |||||||| |||||||||| |||| ||||||||||| ||||||||||||||||| ||| |
|
|
| T |
342367 |
ggcccaaggatcccgtggtttcttccatttctcatattgagaaggtttttcacgctaaaa--ttctttgtgtcattacgcttatatttcacgtttctgct |
342270 |
T |
|
| Q |
309 |
agtgcctattttgggttcacggaggaaggaaattatgcaggcatttcccaacag |
362 |
Q |
| |
|
||||||||||||| |||||||||||| | ||||||||||||||||| ||||||| |
|
|
| T |
342269 |
agtgcctattttgagttcacggaggaggaaaattatgcaggcattttccaacag |
342216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 179; Significance: 3e-96; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 15 - 347
Target Start/End: Original strand, 37037786 - 37038112
Alignment:
| Q |
15 |
aacaacaaaagagcaagagagaaagagggccttgctcaagagaaaagtcatcatcatagagagttttcttgtgagagaaatagtgagccaatttgtgagt |
114 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37037786 |
aacaacaaaa-agcaagagagaaagagagccttgctcaagagaaaagtgatcctcatagagagttttcttgtgagagaaatagtgagccaatttgtgaga |
37037884 |
T |
|
| Q |
115 |
gtgtttcttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattatggtggaagttttaagaggccca |
214 |
Q |
| |
|
|||||||||| |||||||||| | |||||| ||||||||||||||| ||||||||||||||||| ||||||| |||| ||| ||| ||||||||||||| |
|
|
| T |
37037885 |
gtgtttcttataaattgagagtcagattgtaatgagatccacctaagagtgaagttgttgtattctcattatcgttatagtgaaag-tttaagaggccca |
37037983 |
T |
|
| Q |
215 |
agggtcccgtggttttttccctttctcacattgaaaaggttttccacgctaaaattttctctgtgtcattacacttatatttcacgtttccgctagtgcc |
314 |
Q |
| |
|
||||||||||||||| | ||||||||||||||| |||||||||| |||||||| ||| |||||| |||| | | |||||| |||| |||||||||| |
|
|
| T |
37037984 |
agggtcccgtggtttct--cctttctcacattgagaaggttttcctcgctaaaa--atctatgtgtctttacgcaaagatttcaggttttcgctagtgcc |
37038079 |
T |
|
| Q |
315 |
tattttgggttcacggaggaaggaaattatgca |
347 |
Q |
| |
|
||||||| |||||||||||| ||||||||||| |
|
|
| T |
37038080 |
tattttgagttcacggaggagagaaattatgca |
37038112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 577 - 651
Target Start/End: Original strand, 18675457 - 18675531
Alignment:
| Q |
577 |
ggtttctgactgtgtatacttactatcattaaggtctctaacaataaacacttactgttactaaggtccttgaca |
651 |
Q |
| |
|
|||| ||||||||| ||||||||||||| | ||||| || |||||||| | ||| ||| ||||| |||||||||| |
|
|
| T |
18675457 |
ggttcctgactgtgcatacttactatcagttaggtccctgacaataaatatttattgtcactaatgtccttgaca |
18675531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 583 - 653
Target Start/End: Complemental strand, 38854287 - 38854217
Alignment:
| Q |
583 |
tgactgtgtatacttactatcattaaggtctctaacaataaacacttactgttactaaggtccttgacaat |
653 |
Q |
| |
|
|||||||| ||||||||||||| ||||| || ||||||| |||||||| | |||||||||| ||||||| |
|
|
| T |
38854287 |
tgactgtgcatacttactatcagctaggtccctgacaataatcacttactatcactaaggtccatgacaat |
38854217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 161; Significance: 2e-85; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 142 - 361
Target Start/End: Original strand, 22981494 - 22981710
Alignment:
| Q |
142 |
tgtagtgagatccacctaagggtgaagttgttgtattcccattatcattatggtggaagttttaagaggcccaagggtcccgtggttttttccctttctc |
241 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22981494 |
tgtagtgaaatccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtgg-tttttccctttctc |
22981592 |
T |
|
| Q |
242 |
acattgaaaaggttttccacgctaaaattttctctgtgtcattacacttatatttcacgtttccgctagtgcctattttgggttcacggaggaaggaaat |
341 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||| ||||| ||||||||||| |||||| |
|
|
| T |
22981593 |
acattgagaaggttttccacgctaaaa--ttctctgtgtcattacgcttatttttcacgtttccgctagtgcctgttttgagttcacggaggggggaaat |
22981690 |
T |
|
| Q |
342 |
tatgcaggcatttcccaaca |
361 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
22981691 |
tatgcagtcatttcccaaca |
22981710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 142 - 361
Target Start/End: Complemental strand, 23806914 - 23806698
Alignment:
| Q |
142 |
tgtagtgagatccacctaagggtgaagttgttgtattcccattatcattatggtggaagttttaagaggcccaagggtcccgtggttttttccctttctc |
241 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23806914 |
tgtagtgaaatccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggt-ttttccctttctc |
23806816 |
T |
|
| Q |
242 |
acattgaaaaggttttccacgctaaaattttctctgtgtcattacacttatatttcacgtttccgctagtgcctattttgggttcacggaggaaggaaat |
341 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||| ||||| ||||||||||| |||||| |
|
|
| T |
23806815 |
acattgagaaggttttccacgctaaaa--ttctctgtgtcattacgcttatttttcacgtttccgctagtgcctgttttgagttcacggaggggggaaat |
23806718 |
T |
|
| Q |
342 |
tatgcaggcatttcccaaca |
361 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
23806717 |
tatgcagtcatttcccaaca |
23806698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 143 - 361
Target Start/End: Complemental strand, 31152133 - 31151926
Alignment:
| Q |
143 |
gtagtgagatccacctaagggtgaagttgttgtattcccattatcattatggtggaagttttaagaggcccaagggtcccgtggttttttccctttctca |
242 |
Q |
| |
|
||||| || |||| || ||||||||| | ||||||||||||||| ||||| ||||| | ||||||||||| | || |||||||||||||| | || |||| |
|
|
| T |
31152133 |
gtagttaggtccatctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacggatcccgtggtttttttc-ttactca |
31152037 |
T |
|
| Q |
243 |
cattgaaaaggttttccacgctaaaatttt-ctctgtgtcattacacttatatttcacgtttccgct--agtgcctattttgggttcacggaggaaggaa |
339 |
Q |
| |
|
|||||| |||||||||||| ||||||||| | ||||||||| |||| ||||||||| ||||||||||||| ||||| ||||| |||| |
|
|
| T |
31152036 |
cattgagaaggttttccacattaaaattttgttgtgtgtcatt----ttat-------gtttccgctaaagtgcctattttgagttcagagaggagggaa |
31151948 |
T |
|
| Q |
340 |
attatgcaggcatttcccaaca |
361 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
31151947 |
attatgcaggcatttcccaaca |
31151926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 582 - 668
Target Start/End: Complemental strand, 24940701 - 24940615
Alignment:
| Q |
582 |
ctgactgtgtatacttactatcattaaggtctctaacaataaacacttactgttactaaggtccttgacaatgtacatttacaacta |
668 |
Q |
| |
|
|||||||||| |||||||| ||| |||||||||| ||| || ||||||| ||| | ||||||||||||||||||||| ||||||||| |
|
|
| T |
24940701 |
ctgactgtgtctacttactgtcactaaggtctctgacagtagacacttattgtcagtaaggtccttgacaatgtacaattacaacta |
24940615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 148; Significance: 1e-77; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 9 - 270
Target Start/End: Original strand, 16698345 - 16698601
Alignment:
| Q |
9 |
gagatgaacaacaaaagagcaagagagaaagagggccttgctcaagagaaaagtcatcatcatagagagttttcttgtgagagaaatagtgagccaattt |
108 |
Q |
| |
|
|||| ||||||||||| |||||||||| |||| |||||||||||||||||||| ||| |||||||||||||||||||| ||||||||| || |||||| |
|
|
| T |
16698345 |
gagaagaacaacaaaa-agcaagagaggaagatagccttgctcaagagaaaagtgatcctcatagagagttttcttgtgggagaaatagggacccaattc |
16698443 |
T |
|
| Q |
109 |
gtgagtgtgtttcttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattatggtggaagttttaaga |
208 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
16698444 |
gtgagagtgtttcttacaaattgagagatacattgtagtgagatccacataagggtgaa---gttgtattcccattatcattatagtggaagttttaaga |
16698540 |
T |
|
| Q |
209 |
ggcccaagggtcccgtggttttttccctttctcacattgaaaaggttttccacgctaaaatt |
270 |
Q |
| |
|
|| ||||||||||| | ||||||||||||||||||||| |||| ||||||| |||||||| |
|
|
| T |
16698541 |
ggtccaagggtcccat-aatttttccctttctcacattgagaaggatttccacactaaaatt |
16698601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 145 - 361
Target Start/End: Complemental strand, 22764029 - 22763814
Alignment:
| Q |
145 |
agtgagatccacctaagggtgaagttgttgtattcccattatcattatggtggaagttttaagaggcccaagggtcccgtggttttttccctttctcaca |
244 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||| |||||||||| | |
|
|
| T |
22764029 |
agtgagattcacctaagagtgaagttgttgtattcccattatcattatagcataagttttaagaggcccaatggtcccgtggttttt-ccctttctcata |
22763931 |
T |
|
| Q |
245 |
ttgaaaaggttttccacgctaaaattttctctgtgtcattacacttatatttcacgtttccgctagtgcctattttgggttcacggaggaaggaaattat |
344 |
Q |
| |
|
|||| ||||||||||| ||||||||| ||| ||| ||||||| ||||||||||||||||| ||||||||||||||| ||| | ||||||| ||||||| |
|
|
| T |
22763930 |
ttgagaaggttttccatgctaaaattctctttgtatcattacgcttatatttcacgtttctgctagtgcctattttaaattctccgaggaagaaaattat |
22763831 |
T |
|
| Q |
345 |
gcaggcatttcccaaca |
361 |
Q |
| |
|
|| | |||||||||||| |
|
|
| T |
22763830 |
gctgacatttcccaaca |
22763814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 152 - 362
Target Start/End: Original strand, 33808018 - 33808214
Alignment:
| Q |
152 |
tccacctaagggtgaagttgttgtattcccattatcattatggtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgaaaa |
251 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| ||||| ||||| | ||||||||||| | |||||||||||||||| |||| |||||||||| || |
|
|
| T |
33808018 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggttttt--ccttactcacattgagaa |
33808113 |
T |
|
| Q |
252 |
ggttttccacgctaaaattttctctgtgtcattacacttatatttcacgtttccgct--agtgcctattttgggttcacggaggaaggaaattatgcagg |
349 |
Q |
| |
|
||||||||||||||||||||| | |||||| |||| ||||||||||| ||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
33808114 |
ggttttccacgctaaaattttgt-tgtgtc-----------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcagg |
33808201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 152 - 362
Target Start/End: Original strand, 33811672 - 33811868
Alignment:
| Q |
152 |
tccacctaagggtgaagttgttgtattcccattatcattatggtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgaaaa |
251 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| ||||| ||||| | ||||||||||| | |||||||||||||||| |||| |||||||||| || |
|
|
| T |
33811672 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggttttt--ccttactcacattgagaa |
33811767 |
T |
|
| Q |
252 |
ggttttccacgctaaaattttctctgtgtcattacacttatatttcacgtttccgct--agtgcctattttgggttcacggaggaaggaaattatgcagg |
349 |
Q |
| |
|
||||||||||||||||||||| | |||||| |||| ||||||||||| ||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
33811768 |
ggttttccacgctaaaattttgt-tgtgtc-----------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcagg |
33811855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 152 - 362
Target Start/End: Original strand, 33816590 - 33816786
Alignment:
| Q |
152 |
tccacctaagggtgaagttgttgtattcccattatcattatggtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgaaaa |
251 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| ||||| ||||| | ||||||||||| | |||||||||||||||| |||| |||||||||| || |
|
|
| T |
33816590 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggttttt--ccttactcacattgagaa |
33816685 |
T |
|
| Q |
252 |
ggttttccacgctaaaattttctctgtgtcattacacttatatttcacgtttccgct--agtgcctattttgggttcacggaggaaggaaattatgcagg |
349 |
Q |
| |
|
||||||||||||||||||||| | |||||| |||| ||||||||||| ||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
33816686 |
ggttttccacgctaaaattttgt-tgtgtc-----------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcagg |
33816773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 300 - 361
Target Start/End: Original strand, 16698609 - 16698670
Alignment:
| Q |
300 |
gtttccgctagtgcctattttgggttcacggaggaaggaaattatgcaggcatttcccaaca |
361 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
16698609 |
gtttccgctagtgcctattctgagttcacggaggatggaaattatgcatatatttcccaaca |
16698670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 120; Significance: 5e-61; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 74 - 272
Target Start/End: Complemental strand, 26771 - 26577
Alignment:
| Q |
74 |
agagttttcttgtgagagaaatagtgagccaatttgtgagtgtgtttcttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgtt |
173 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||| ||| ||| |
|
|
| T |
26771 |
agagtttttttgtgaga-aaatagtgagccaatttgtgagagtgttccttacaaattgagagataaattgtagtgagatccacctaagggtggagtagtt |
26673 |
T |
|
| Q |
174 |
gtattcccattatcattatggtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgaaaaggttttccacgctaaaatttt |
272 |
Q |
| |
|
|||||| | ||||||||| ||||||| ||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
26672 |
gtattctcgttatcattagagtggaag-tttaagaggcccaagggtcccgtagttttt--ccttactcacattgaaaaggttttccaccctaaaatttt |
26577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 3e-59; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 9 - 308
Target Start/End: Original strand, 27641966 - 27642261
Alignment:
| Q |
9 |
gagatgaacaacaaaagagcaagagagaaagagggccttgctcaa--gagaaaagtcatcatcatagagagttttcttgtgagagaaatagtgagccaat |
106 |
Q |
| |
|
|||| |||||||||||| |||||||||||||| | ||||||||| ||||||||| ||| || || | ||||| ||| |||||||||||| || |||| |
|
|
| T |
27641966 |
gagaagaacaacaaaag--caagagagaaagagagtcttgctcaaaagagaaaagtgatcctcgtaaaaagtttccttttgagagaaataggaagtcaat |
27642063 |
T |
|
| Q |
107 |
ttgtgagtgtgtttcttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattatggtggaagttttaa |
206 |
Q |
| |
|
||||||| ||||| ||||||||| |||||||||||||||||||||||||| ||| | |||||||||| |||||||||||| ||||| ||||||| ||||| |
|
|
| T |
27642064 |
ttgtgagagtgttccttacaaatagagagatatattgtagtgagatccacttaaagatgaagttgttttattcccattattattatagtggaag-tttaa |
27642162 |
T |
|
| Q |
207 |
gaggcccaagggtcccgtggttttttccctttctcacattgaaaaggttttccacgctaaaattttctctgtgtcattacacttatatttcacgtttccg |
306 |
Q |
| |
|
||| ||| ||| |||||| |||||| ||||||||||||||| |||||||| ||||| |||| ||| ||| ||||||| ||||||||||||||||||| |
|
|
| T |
27642163 |
gagacccgaggaccccgtgatttttt-cctttctcacattgagaaggttttacacgccaaaa--ttccttgtatcattacgcttatatttcacgtttccg |
27642259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 582 - 651
Target Start/End: Complemental strand, 11060545 - 11060476
Alignment:
| Q |
582 |
ctgactgtgtatacttactatcattaaggtctctaacaataaacacttactgttactaaggtccttgaca |
651 |
Q |
| |
|
|||| |||| ||||||||||||| | | ||| |||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
11060545 |
ctgattgtgcatacttactatcagttatgtccctaacagtaaacacttactgttactaaggtccctgaca |
11060476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 584 - 651
Target Start/End: Original strand, 8975520 - 8975587
Alignment:
| Q |
584 |
gactgtgtatacttactatcattaaggtctctaacaataaacacttactgttactaaggtccttgaca |
651 |
Q |
| |
|
||||| ||||||||||||||| | ||||| || || ||||||||||||||| |||| ||||| ||||| |
|
|
| T |
8975520 |
gactgcgtatacttactatcagttaggtccctgactataaacacttactgtaactatggtccctgaca |
8975587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 585 - 645
Target Start/End: Complemental strand, 44720628 - 44720568
Alignment:
| Q |
585 |
actgtgtatacttactatcattaaggtctctaacaataaacacttactgttactaaggtcc |
645 |
Q |
| |
|
|||||||||||||||||||| | ||||| | ||||||||||||||| || ||||| |||| |
|
|
| T |
44720628 |
actgtgtatacttactatcagttaggtccttgacaataaacacttaccgtcactaaagtcc |
44720568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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