View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10524_5 (Length: 641)
Name: NF10524_5
Description: NF10524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10524_5 |
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Alignment Details
Target: chr7 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 16 - 609
Target Start/End: Complemental strand, 23976653 - 23976059
Alignment:
| Q |
16 |
catcatcatcataagtataacacgcgcacgcacacacatcctaattttttgtcacaatt-cttttacnnnnnnnatagtgatttaattaatacctggatt |
114 |
Q |
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| T |
23976653 |
catcatcatcataagtataacacgcgcacgcacacacatcctaattttttgtcacaatttcttttactttttttatagtgatttaattaatacctggatt |
23976554 |
T |
|
| Q |
115 |
atttgcttgaaatctgatgacagcccatcctcccacaggaatagaaatcgtgttacgtctttgagggtttaccagattaaacttggcacgatcagtggtg |
214 |
Q |
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| T |
23976553 |
atttgcttgaaatctgatgacagcccatcctcccacaggaacagcaatcgtgttacgtctttgagggtttaccagattaaacttggcacgatcagtggtg |
23976454 |
T |
|
| Q |
215 |
gaattgaaatttccaaacccttgagccaaaatgtggaagctaaaaccatgaatatgcataggatggttttgtgcaccaacaagtgatgtactttggaaaa |
314 |
Q |
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| T |
23976453 |
gaattgaaatttccaaacccttgagccaaaatgtggaagctaaaaccatgaatatgcataggatggttttgtgcaccaacaagtgatgtactttggaaaa |
23976354 |
T |
|
| Q |
315 |
caatctccaacgttgaattgaacttgagtctctttaccttggttgatttcggggcaaataaaaggttcttatttaaattcgggttagggttagtgaagtc |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
23976353 |
caatctccaacgttgaattgaacttgagtctctttaccttggttgatttcggagcaaataaaaggttcgtatttaaattcgggttagggttagtgaagtc |
23976254 |
T |
|
| Q |
415 |
aaatataaccggaggattgttagggaaatcggcggtgtaaactccgctcacgttgttgaaaaatgcttccaacatagaaagtcctctccctttaggaata |
514 |
Q |
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| T |
23976253 |
aaatataaccggaggattgttagggaaatcggcggtgtaaactccgctcacgttgttgaaaaatgcttccaacatagaaagtcctctccctttaggaata |
23976154 |
T |
|
| Q |
515 |
acaaaagactcattgttcatgctaaaagacaatcgttggttgaacggaccaagacacgtggcattggcgacgtttgaaggatcacacctttcaag |
609 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23976153 |
acaaaagactcattgttcatgctaaaagacaattgttggttaaacggaccaagacacgtggcattggcgacgtttgaaggatcacacctttcaag |
23976059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 180
Target Start/End: Complemental strand, 6027536 - 6027459
Alignment:
| Q |
103 |
aatacctggattatttgcttgaaatctgatgacagcccatcctcccacaggaatagaaatcgtgttacgtctttgagg |
180 |
Q |
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| T |
6027536 |
aatacctggattatttgcttgaaatctaacaacagcccatcctcccactggcacagaaatggtgttacgcatttgagg |
6027459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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