View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10524_7 (Length: 533)
Name: NF10524_7
Description: NF10524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10524_7 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 27 - 520
Target Start/End: Original strand, 43094703 - 43095176
Alignment:
| Q |
27 |
catgataaaagaaggtggagccattgatagaggaagggtggggcaggaacaagactgtgtcatgatatcttatccaccccgctgttagcaaaaacacatg |
126 |
Q |
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| T |
43094703 |
catgataaaagaaggtggagccattgatagaggaagggtggggcaggaacaagactgtgtcatgatatcttatccaccccgctgttagcaaaa------- |
43094795 |
T |
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| Q |
127 |
caaaagtcaattccccacaactgtgtttagacagctctataggatttattacaattctctatttaaatacctactattgctaactgtgttttattctatc |
226 |
Q |
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| T |
43094796 |
-----gtcaattccccacaactgtgtttagacagctctataggatttatcacaattctctatttaaatacctactattgctaactgtgttttattctatc |
43094890 |
T |
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| Q |
227 |
aaatcaaaaattgatttcgtaaaattgattttaattagaagtgactttatgttacaatatt------ttatgcaatgtgaaactcgaacaataaatttaa |
320 |
Q |
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| T |
43094891 |
acatcaaaaattgattt--------------tagttagaagtgactttatgttacaatgttaatgttttatgtaatgtgaaacttgaacaataaatttaa |
43094976 |
T |
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| Q |
321 |
attttgaaatcaaatttgcagactaaattgcaatttctaacttctaacttagaattaattttaactcttcaaaatcacttttgactctactaaaattgaa |
420 |
Q |
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| T |
43094977 |
atgttgaaatcaaatttgcagactaaattgaaatttctaacttctaacttagaattaattttaactcttcaaaatcacttttgactctactaaaattgaa |
43095076 |
T |
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| Q |
421 |
tccaaatacctactatttaacaatataatccttagtctttacacacaacaaagaggcaataaagaaatcatctagctctcaagatatatatcacaggttc |
520 |
Q |
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| T |
43095077 |
tccaaatatctactatttaacaatataatccttagtctttacgcacaataaagaggcaataaagaaatcatctagctctcaagatatatatcacaggttc |
43095176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 424
Target Start/End: Complemental strand, 35728892 - 35728845
Alignment:
| Q |
377 |
aattttaactcttcaaaatcacttttgactctactaaaattgaatcca |
424 |
Q |
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|||||||| ||||||||||||||||||||||| | |||| |||||||| |
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| T |
35728892 |
aattttaattcttcaaaatcacttttgactcttccaaaagtgaatcca |
35728845 |
T |
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