View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10524_9 (Length: 483)
Name: NF10524_9
Description: NF10524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10524_9 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 228 - 464
Target Start/End: Original strand, 30632400 - 30632631
Alignment:
| Q |
228 |
aatggaataaacactagaattgagatcaccaagagaagagaattcatgatatggtcttcatggcatcatcaacaacacataatcacgacagaaaaaactg |
327 |
Q |
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| T |
30632400 |
aatggaataaacactggaattgagatcaccaagagaata-----catgaaatggtcttcatggcatcatcaacaacacataatcatgacagaaaaaactg |
30632494 |
T |
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| Q |
328 |
tagcagcatgaacctgtttatcgccaccatcgtgattgcgttcggaatttactgctgcaatggagaaacagtgatagagccaaaaggaacacctgactca |
427 |
Q |
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| T |
30632495 |
tagcagcatgaacctgtttatcgccaccatcgtgattgcgttcagaatttactgctgcaatggagaaacagtgatagagccaaaaggaacacctgattca |
30632594 |
T |
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| Q |
428 |
gctgtttgggttgttcagctttccgatcttcatctca |
464 |
Q |
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| T |
30632595 |
gctgtttgggttgttcagctttccgatcttcatctca |
30632631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 28 - 140
Target Start/End: Original strand, 30631874 - 30631986
Alignment:
| Q |
28 |
aagtggaatttcaaatgccctgtaaaaacttagtgagttttcgtaattcgattccactaaatctagtaatatcaatattattggtcgaacttgaaattaa |
127 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30631874 |
aagtggaatttcaaataccctgtaaaaacttagtgagttttcgtaattcgattccactaaatctagtaatatcaatattattggtcgaatttgaaattaa |
30631973 |
T |
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| Q |
128 |
ggacgaaatagtg |
140 |
Q |
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| T |
30631974 |
ggacgaaatagtg |
30631986 |
T |
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